RNA id: TU64072



Basic Information


Item Value
RNA id TU64072
length 524
lncRNA type read_through
GC content 0.47
exon number 2
gene id G51220
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 10609746 ~ 10673784 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


atcggaccTCCACtattttccccactcttcctcaccttctgctgatctctccatctcaatccccttggaatctacgaaactctctccttcttcttccgctaaaaaccAAGGAGTCACCCtggatcctgcgctctcctacacccagcacatcaccacgctgacacgcacctgcagattcttcctgagcaacatacactcacctaaaggattattaggaacaccatactaatactgtgtttgaccccctttcgccttcagaactgccttaattctacgtggcattgattcaacaaggtgctgaaagcattctttagaaatgttggcccatattgataggatagcatcttgcagttgatggagatttgtgggatgcacatccagggcacgaagctcccgttccaccacatcccaaagatgctctattgggttgagatctggtgactgtgggggccagtttagtacagtgaactcattgtcatgttcaagaaaccaatttgaaatgattcgacctttgtgacatggtg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU64052 lncRNA upstream 39810 10569710 ~ 10569936 (+) True G51212
TU64051 lncRNA upstream 41935 10566737 ~ 10567811 (+) True G51211
TU64050 lncRNA upstream 44806 10564374 ~ 10564940 (+) True G51210
TU64049 lncRNA upstream 46647 10558639 ~ 10563099 (+) True G51209
TU63989 lncRNA upstream 327764 10275181 ~ 10281982 (+) True G51168
TU64079 lncRNA downstream 1781 10675565 ~ 10712485 (+) True G51226
TU64082 lncRNA downstream 1781 10675565 ~ 10712485 (+) False G51226
TU64078 lncRNA downstream 7332 10681116 ~ 10682879 (+) False G51226
TU64080 lncRNA downstream 7332 10681116 ~ 10712485 (+) False G51226
TU64084 lncRNA downstream 7332 10681116 ~ 10682879 (+) False G51226
AMCG00008742 mRNA upstream 297649 10311582 ~ 10312097 (+) True AMCG00008742
AMCG00008737 mRNA upstream 324588 10276950 ~ 10285158 (+) True AMCG00008737
AMCG00008738 mRNA upstream 334535 10258446 ~ 10275211 (+) True AMCG00008738
AMCG00008736 mRNA upstream 390380 10217338 ~ 10219366 (+) True AMCG00008736
AMCG00008727 mRNA upstream 678231 9927387 ~ 9931515 (+) True AMCG00008727
AMCG00008749 mRNA downstream 18751 10692535 ~ 10719316 (+) True AMCG00008749
AMCG00008753 mRNA downstream 123987 10797771 ~ 10803672 (+) True AMCG00008753
AMCG00008752 mRNA downstream 154784 10828568 ~ 10846436 (+) True AMCG00008752
AMCG00008754 mRNA downstream 221258 10895042 ~ 10906610 (+) True AMCG00008754
AMCG00008755 mRNA downstream 237343 10911127 ~ 10929774 (+) True AMCG00008755
TU63913 other upstream 678665 9929478 ~ 9931081 (+) False AMCG00008727
TU63914 other upstream 678665 9929478 ~ 9931081 (+) False AMCG00008727
TU63743 other upstream 1293595 9310086 ~ 9316151 (+) False AMCG00008710
TU64057 other downstream 31694 10705478 ~ 10707093 (+) False AMCG00008749
TU64201 other downstream 311106 10984890 ~ 11040674 (+) False G51297
TU64384 other downstream 786579 11460363 ~ 11465488 (+) True G51445
TU64730 other downstream 2041710 12715494 ~ 12716786 (+) True G51734
TU64761 other downstream 2168931 12842715 ~ 12846233 (+) True G51756

Expression Profile