RNA id: TU64082



Basic Information


Item Value
RNA id TU64082
length 667
lncRNA type sense_over
GC content 0.39
exon number 2
gene id G51226
representative False

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 10675565 ~ 10712485 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


caaaTGTCTTAGTCACaattttttctttatacatttcGGTGATATGaattcacaaacaaaaaataattaagcagaaaaaatattgatattctACTAAAGAAATGTAGCATTGTAACACAATTAGCATCAACAATACGCAATAGCATGTCACCACCTGCGTTATGTCAATAGGCTACAAACAATCGCTCACATTTGCTAGTTGAGTGGAGACTCACTTTCTCATCTGTCTTCACTTTCTGTTTGGTAGCCTAACAACAAACTTAATCCTTAGTACCATACCAATACACAAAAGAAACGAAAAACCAACAAACCCCAAACTCTTGGTATGGAAGACAGGACAAGTGAAAGTCAAGACACGTTGTGTTGAAGCACTcagatttatttcagttttgctgTTACAGGGTCAATTGTAGAAAATTCAGGATTCTTTATGTGCATTCTTTAGTCTTCAACAGTGCACTCACAACAACCTCAGTGAACAGAATGTAAAGACTAGATCAGTCAAAGCCAAGGGGCTCAGCGCTGCCACTTCATTACAAACCACCTCTGAGGAGTTGGGCGCACTTTGAAGTCAATTGGGTCTGCATTCAGTCGATCGTCACATGGCACTAATACAAACACAGCGGGCTCAGTGGATGGAGAAGTAAAGGGAAGGATGGGATNNNNN

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU64072 lncRNA upstream 1781 10609746 ~ 10673784 (+) True G51220
TU64052 lncRNA upstream 105629 10569710 ~ 10569936 (+) True G51212
TU64051 lncRNA upstream 107754 10566737 ~ 10567811 (+) True G51211
TU64050 lncRNA upstream 110625 10564374 ~ 10564940 (+) True G51210
TU64049 lncRNA upstream 112466 10558639 ~ 10563099 (+) True G51209
TU64061 lncRNA downstream 56168 10768653 ~ 10771675 (+) False AMCG00008749
TU64131 lncRNA downstream 91421 10803906 ~ 10804107 (+) True G51252
TU64133 lncRNA downstream 131896 10844381 ~ 10846286 (+) False AMCG00008752
TU64136 lncRNA downstream 131896 10844381 ~ 10846286 (+) False AMCG00008752
TU64158 lncRNA downstream 155450 10867935 ~ 10910645 (+) True G51265
AMCG00008746 mRNA upstream 50396 10618726 ~ 10625169 (+) True AMCG00008746
AMCG00008745 mRNA upstream 57400 10611383 ~ 10618165 (+) True AMCG00008745
AMCG00008742 mRNA upstream 363468 10311582 ~ 10312097 (+) True AMCG00008742
AMCG00008737 mRNA upstream 390407 10276950 ~ 10285158 (+) True AMCG00008737
AMCG00008738 mRNA upstream 400354 10258446 ~ 10275211 (+) True AMCG00008738
AMCG00008753 mRNA downstream 85286 10797771 ~ 10803672 (+) True AMCG00008753
AMCG00008752 mRNA downstream 116083 10828568 ~ 10846436 (+) True AMCG00008752
AMCG00008754 mRNA downstream 182557 10895042 ~ 10906610 (+) True AMCG00008754
AMCG00008755 mRNA downstream 198642 10911127 ~ 10929774 (+) True AMCG00008755
AMCG00008758 mRNA downstream 225754 10938239 ~ 10949947 (+) True AMCG00008758
TU63913 other upstream 744484 9929478 ~ 9931081 (+) False AMCG00008727
TU63914 other upstream 744484 9929478 ~ 9931081 (+) False AMCG00008727
TU63743 other upstream 1359414 9310086 ~ 9316151 (+) False AMCG00008710
TU64201 other downstream 272405 10984890 ~ 11040674 (+) False G51297
TU64384 other downstream 747878 11460363 ~ 11465488 (+) True G51445
TU64730 other downstream 2003009 12715494 ~ 12716786 (+) True G51734
TU64761 other downstream 2130230 12842715 ~ 12846233 (+) True G51756
TU64826 other downstream 2212753 12925238 ~ 12926794 (+) True G51812

Expression Profile