RNA id: TU64084


Basic Information

Item Value
RNA id TU64084
length 716
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G51226
representative False

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 10675565 ~ 10712485 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaagaaaaaaacaagatcaGAATTAATAAAACTTTCCATAAGAGGAGTTTTGTCTGCGCCATCCAGTcagttctgtctgtctttctgtctgttcGCCACAGTGAGCAAGCAATCCCTTGTGGTACGTCAAGCTAGGAAAGGTGgaagacttaaaaaatataccaaaggtatagaaaaacaaaacaagtcttGGGTGCTCAGAATGTGGCCTTTTAGCTGTTGGTCACCAGTGCAGTCATAGAGAAGCTTAGGGATGACTGCATTCCCCAGACTGTCCTCCAGCTTCCCCGAACAGCACTCTGGCTTTAATGGGCGATACCACAGACCTGTGTGGTACAATGCTGTTTACATAGTTGGGCACCCATTTGAAACTGAGAGGCAAGGAGAATGTGACAAGTTAGAAACATCCCATCCTTCCCTTTACTTCTACATCCGCTGAGCCCGCTGTGTTTGTATTAGTGCCATGTGACGTTCGACTGAATGCAGACCTTATTGACTTCAAAGTGCGCCCAACTCCTCAGAGGTGGTTTGTGCTGAAATGGCAGCGCTGAGCCCCTTGGCTTTGACTGATCTCGTCCTTACATTCTGTTCACTGAGGTTGTTGTGAGTGCACTGTTGAAGACTAAAGAATTAAAGAATACTGACTGTTGTCACCAAATTAAATTTTCTACATTGGCCCTGTAacatcaaaactgaaataaatatgagtGCTTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64072 lncRNA upstream 7332 10609746 ~ 10673784 (+) True G51220
TU64052 lncRNA upstream 111180 10569710 ~ 10569936 (+) True G51212
TU64051 lncRNA upstream 113305 10566737 ~ 10567811 (+) True G51211
TU64050 lncRNA upstream 116176 10564374 ~ 10564940 (+) True G51210
TU64049 lncRNA upstream 118017 10558639 ~ 10563099 (+) True G51209
TU64058 lncRNA downstream 9498 10692377 ~ 10718162 (+) False AMCG00008749
TU64061 lncRNA downstream 85774 10768653 ~ 10771675 (+) False AMCG00008749
TU64131 lncRNA downstream 121027 10803906 ~ 10804107 (+) True G51252
TU64133 lncRNA downstream 161502 10844381 ~ 10846286 (+) False AMCG00008752
TU64136 lncRNA downstream 161502 10844381 ~ 10846286 (+) False AMCG00008752
AMCG00008746 mRNA upstream 55947 10618726 ~ 10625169 (+) True AMCG00008746
AMCG00008745 mRNA upstream 62951 10611383 ~ 10618165 (+) True AMCG00008745
AMCG00008742 mRNA upstream 369019 10311582 ~ 10312097 (+) True AMCG00008742
AMCG00008737 mRNA upstream 395958 10276950 ~ 10285158 (+) True AMCG00008737
AMCG00008738 mRNA upstream 405905 10258446 ~ 10275211 (+) True AMCG00008738
AMCG00008749 mRNA downstream 9656 10692535 ~ 10719316 (+) True AMCG00008749
AMCG00008753 mRNA downstream 114892 10797771 ~ 10803672 (+) True AMCG00008753
AMCG00008752 mRNA downstream 145689 10828568 ~ 10846436 (+) True AMCG00008752
AMCG00008754 mRNA downstream 212163 10895042 ~ 10906610 (+) True AMCG00008754
AMCG00008755 mRNA downstream 228248 10911127 ~ 10929774 (+) True AMCG00008755
TU63913 other upstream 750035 9929478 ~ 9931081 (+) False AMCG00008727
TU63914 other upstream 750035 9929478 ~ 9931081 (+) False AMCG00008727
TU63743 other upstream 1364965 9310086 ~ 9316151 (+) False AMCG00008710
TU64057 other downstream 22599 10705478 ~ 10707093 (+) False AMCG00008749
TU64201 other downstream 302011 10984890 ~ 11040674 (+) False G51297
TU64384 other downstream 777484 11460363 ~ 11465488 (+) True G51445
TU64730 other downstream 2032615 12715494 ~ 12716786 (+) True G51734
TU64761 other downstream 2159836 12842715 ~ 12846233 (+) True G51756