RNA id: TU64129


Basic Information

Item Value
RNA id TU64129
length 2397
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G51251
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 10801108 ~ 10803709 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAGCGACATAAAAAACAGGACTCGTGTATATGCTGAAGAGATTTCCATTTATTAGAAGGCCACACAGTGGGAGTACAATGCgattctttgtttttctaaagtaGGGAAAGCTGTGGCCCGTGGGTTGGGGGAAGTAGGAACAGGGGAGTGTAGGAGCGGAGAAAGGGTGAGAGGAGGGTTACAAGAGGGGATCTGCACCTCTGCTGCCGGAGAGACTTCTGCATTGGTGATCCAGCTGAGGTTTCAACAACTGGATCCTTTCAACTCACTGACTTTACAAACTGCCCATACATCATGCTTGACAGagactctccaggaccagggctgcagacccACCCTGGGTAACAGCATAGGGGGAGAGAGGTTAAGGCACTGGTGTGAAGGGAGGATGGGGTCTGGGGATTTTGGGGGCTCAGGACGAGAGCTCCCTGGTCTTGGTGCTCTCTGACACCACCTTGCCATCCACCACTGTCTGCGTCACGGTCATCACTTTGGTCTTGGTGGTCTTCTGGTCTTCGAGAGCGTCCTGGAGCCTGGACACACGACAGGAGAGTGAGCATTCACCCGGCAGAAAGCTCACTTGGTGGCTTTTGCTGAGTCTCACCGGGCTAAATGATGGAGCTACTGACTGGTGGGTAAGCAGAGGTCAGTTTGTTATGTTCACTGGGTTTACAAAAGCCTATTCATCAGGTTGACTGATGCACTACTTCAAGCCAAAGAACAAATCTTCAGCACTTAAATGCTACTCTAAACCTATGTTTGTGTCAAATTTCCACTGACTAACTTCTCACCGCTCCACTAAACCAGACTGTGACAAACTACTGACAACAGTCAACACTATGTTACTACCCTGATATGAGTATAGTAAATCACAGAAGTAATTACCGCAGGAGACATGTAGACAGGGTAAAATCAGTAATACTGGGTAATGTTAAAACATCCAATAAGGCGCTGAAATATATACCATTCTGTTCAGGCAGATTGCATGCTGGGATGATTTGTAGGTGTGACTATTCTTGAAAAAGTGTAAATTCTCTCAAGGAGCTGAACCATATCGGATGATTATTCTGGTTCTGATTGCCCGCTCACCTGAAGTCCCCGCCATCCAGCAGGCGCCTGTATGTGGCAATCTCAGCCTCCAGCTTCATCTTGATGTTGAGCAGGGCCTCGTAATCCTGCCCCTGCTGCTGGATGTTGTGGCGCAGTTGTGTCAGCTCGGCCTCCAGCTGCAGGATGATGGTGTTGTACTTCTCCATCTCCATGTTGTTGCGTATCTCTGTGTCACGCAGTGCATCTTCCAGGGAGGCTTTCCATGCTCCTCTGGGACTCCAGCTCGATCTCCAGTGACTGGAACTGTCTGCGCAGCTCTGTAATCTCTGTCCGTGCTCCCTGAAGGGCCTCTGTGTTCTGGGACACCTGCACCTGGACCTCTGTGATCTGGGGAAGGAAGAAGATGGAGGTCATGTTTGGGGCCTTTGAGTTGAGGAAGAGAGCAGATCCCCTTATGAGCGAGATGTCTTTCTCAGGCTCTGATGCTGAGGTGTGGGAGTTCCACTGCATGTCAACATATACTCAATTTCAGCTCTCGTCAGGATTCTTGGTACCTGTTTAGGCAGAATTAAGTAAAAAATTGAAGGAATGTGAGGATGATAAGTGGTACCTGGCTTTCGTGCCAGGTTTTGAGCTCTTCCTGGCTCTGTAGCGCCATCTTCTCATATTTGGCCCTCATCTCGGCCATGATGTGCGCCAGGTCCTGTCCCTTGGGAGCGTCCACGTCCACCTGCACCCCGGACTGTGCGATCTGGTTGCGCATCTCCATCacctcctgcagagagagggggagagggacaTTGGTCAGACATGGTGCAATGAAATCAATCCTCATCCatggaaaaacatacaaaatgacaACTGTGTAAAATGACCACACTACAAATCTCACAATAGTAGTGCTAGTCATGTACGAGTTCTGTGTGGACTGATTTGGATCGCCACTGGAAAGGCAGCTGCAAGTCTTGGGATGTCTACTGGCgcttgtgtgtgcttgtgtgcgcTGGCTGGGCTTACATCATCGTGGTTCTTCTTGAGGTGGATAAGTTCCTCCTTCATGGCCTCGATCTCGCTCTCCAGGTTCATGCGGCCCATGTTGGTGTCGTCGATCATTCTCCTCAGCCCGACGATGTCCGACTCCACCGACTGGCGGATGGCCAGCTCCGACTCGAACCTGCAGCCATggaggggaaggagagagagtcagagagaggcCACAATCGATCAGACTATTGGAGAATGTCAATAGTCTAAACAACCAGAGCTAGACAATCTTGGATCTGCACTGTGTGCGTCCAAGCTTTCTGATATGGTGTTGGGCTGTACTGTGTGGCCTACGATCTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64104 lncRNA downstream 88623 10675756 ~ 10712485 (-) False G51241
TU64106 lncRNA downstream 88623 10675756 ~ 10712485 (-) False G51241
TU64107 lncRNA downstream 88623 10675756 ~ 10712485 (-) False G51241
TU64111 lncRNA downstream 88623 10675756 ~ 10712485 (-) False G51241
TU64116 lncRNA downstream 127253 10668711 ~ 10673855 (-) True G51243
TU64148 lncRNA upstream 35397 10839106 ~ 10839672 (-) True G51261
TU64265 lncRNA upstream 253968 11057677 ~ 11059926 (-) True G51344
TU64261 lncRNA upstream 253981 11057690 ~ 11140273 (-) False G51344
TU64262 lncRNA upstream 253981 11057690 ~ 11059926 (-) False G51344
TU64266 lncRNA upstream 253981 11057690 ~ 11059926 (-) False G51344
AMCG00008751 mRNA downstream 29454 10764016 ~ 10771654 (-) True AMCG00008751
AMCG00008750 mRNA downstream 75932 10719492 ~ 10725176 (-) True AMCG00008750
AMCG00008748 mRNA downstream 122135 10670949 ~ 10678973 (-) False AMCG00008748
AMCG00008747 mRNA downstream 138917 10655011 ~ 10662191 (-) True AMCG00008747
AMCG00008744 mRNA downstream 226207 10560866 ~ 10574901 (-) True AMCG00008744
AMCG00008756 mRNA upstream 154875 10958584 ~ 10972379 (-) True AMCG00008756
AMCG00008765 mRNA upstream 200447 11004156 ~ 11011571 (-) True AMCG00008765
AMCG00008763 mRNA upstream 217839 11021548 ~ 11035727 (-) True AMCG00008763
AMCG00008761 mRNA upstream 234593 11038302 ~ 11044119 (-) True AMCG00008761
AMCG00008764 mRNA upstream 241254 11044963 ~ 11051426 (-) True AMCG00008764
TU64128 other downstream 1954 10797632 ~ 10799154 (-) True G51250
TU64119 other downstream 82907 10677263 ~ 10718201 (-) False AMCG00008748
TU64105 other downstream 88623 10680278 ~ 10712485 (-) False G51241
TU64120 other downstream 100625 10677263 ~ 10700483 (-) True AMCG00008748
TU64108 other downstream 118235 10680278 ~ 10682873 (-) True G51241
TU64340 other upstream 431933 11235642 ~ 11295750 (-) False AMCG00008777
TU64350 other upstream 517101 11320810 ~ 11326359 (-) False AMCG00008777
TU64811 other upstream 2087102 12890811 ~ 12891597 (-) True G51797
TU64813 other upstream 2091626 12895335 ~ 12897134 (-) True G51799
TU64897 other upstream 2197117 13000826 ~ 13001888 (-) True G51867

Expression Profile