RNA id: TU64158


Basic Information

Item Value
RNA id TU64158
length 2611
lncRNA type sense_over
GC content 0.39
exon number 2
gene id G51265
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 10867935 ~ 10910645 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGATAGAGAGTGAGAGGGATGCAGTGTGGCCTGGCGTGCACCTTAATGGCGCATTTTCTCCAGCTGACATAAACAATTTCTGGCTGTACAGCTGTCATTTCTTTGAAATTCCCCTGACTCTGACACTCCCACACTCCCCATCTCCAAACCCCTATGTTTGGGATTGGTCAACTCAGCCAGTCTATAGGATGCAAGCTGTGCCCTGGAGGAGTGCTGTTATGGGAGGTGCCACTAGAGGGAGCCCCTCCAGACAGATCTTTTGTGAACGTCTCTGGTCCTGCTCTAAATGGACTGTGATGTTAATGGGAGATGCACACACCACACTCTCATTCTCGCACTGCCCCCAATTATCAAGTAACTGATATTCCACCTGTTCTACATGaggtaaaaatacatttgcaaatggtACAAACGGCTCTAGACAATCCTGTATTGAATCCATATACCTTTtcaaaaatatgcatgtttaaaTAGGGTACCCTTGCtctttaattcacttttttctgtCCATCCCCGACTCAGACCCTTGTTGCATCTCTTTTGGTAAACTGTGCCCAGTGTCTGTCACTCTCGATGCTTCcgtttatacattttgaaaaatcagTGTAGATCTACAAACCTGCCATCCTCCTTTCTCTTCCTGGGGGTCGTCTAGGTCAAACCTATAGAGCCTGGCTGGTGAATAGACTGCATCAGAGTGAGGCTCAATGACAAATGATGCTATCAGGCCTCTGATGCAGAAACGTGCCTCTTTCAAGTGCAATGATGTGTTTGCGtacgtgtgtgagagagtgtagTGAGTGACTGGGCTAAGGAATGTCCCTTTTGTTCCCCTCTGccagtgaaaagtgaaatataaatgagaCCAGTGTAACCAAGCACTGGGGACGACCACAAAGAAAACGGTTATTATTAGACATTGAAGACACTGGATATTCATGTCATTTTGGGGTCAAAGGTGCCTCAGACCGGTGGCAGCCTATGTTAGATGGAAAACATGGGTTGAGTACTCCTATAGGAGCTTAGCCAAGGGGATAAAACAGAGTTGGAATTTGGGTTAATTTGGTCAGGGATGTAGGGAAACTCGGATCAATTATGAAACCAATGGCGTTTCTGGAATGGTATGTTGGCAGGACCCAGGACAATCAAGTGCGAAACAGAGACTGAGATCTGAAAAGGGGGGCAACAAGAAGAAATTGCACATGAACACAGATCTGAACTGCTTTAAGTTCAGGGATAATCATAGGATTTAGAATGGGAAGTAAGTTTCCAAGGGAGATTGAGGTTTCAGGGGCAAGATAGGGAAGTAGGTGGAATTTAGGAGGGTTGTCTTCAATGGCATCTTTTACAGAGCTTTTAGAGCTGAATGGGAGAGATAGAGAGCACATTGCCACTCCACCCCATAAACACAGAGTCCACATAAGGTCTCTTCTCTATCATGGCATGCATTGatccatttaaatattaatcGGAGacaccatttttaattttaatttatttttttagttgaGCAAGGAGACCGCCCCAAGGTTTATGGCAgagagatgattaaaggaactCTATTGTATAATCACTGTGTCTGTAGGTCGCTTTAACCAAAGACTTTTACTGTGCACTCTCGCTACACGTTAAAGCTATATTcagttgtattttgtaaaagctttgtgcatttatatttacataacattagttttttgttttgtttttttaaacagttaaaaaaagacACCAAGTCTAAGACAGctttaatatattgtgttttgtgttatgtttttttataacaatCTTTGTATgtagtaatatatttttctcacaTGCAGCTGCCTCggaaaatatataagaaaaggATGGAAACAGtataagagaaaaaaatgaatttatattatatttgctattttttaaaactgcaatgtataccaaaaaatgaagaatataaataaaaatgtatagttaTGTTACTGATATTTTGTCTTtatctgttgctttttttcATGTAAGAAGTCTTACTAGTTTATGCTGGTaatgtttgtaaaatgattACTGATGTTGTcatttgttgcatttatttatttatctacatagatttttattttttttatcctagagggtttttggtttgtttcttttgttttttaaaactgaagCTTTTTAATAGGCTAAGTATTTCAATGCTTTTAGGCCTACTGGCACATTATTTGTTCTAGATTAATCTTCGACCTGAGAAGCGCGAGACGCATGtatctgaaataaatgcattgacaCACTTTCATTACGTCACGACTAAACCCATACAAACAACACTACCCTGCcaacaattttgttttctaaatcgATTATTCAAActatagttttattttggtaGAACTAAGAATCACTGTGAAGTTGTCATTGTTGTGAATGTTTTCAATTAGATGTGTGTTTACAAAAGGATAAAAGTTTCCATCTTTCTATGTCTGAAGAtgtgttgaatgtgttttttaccATGAGAAAATTCTTGGCGAGAAAGAAACGTGTTTCTGCTGCAAAGATCAATCACTCATCTTGGTGACCTGTGGTAGCAGACTCAAGAAGCAGTAGGTAATGGGGTTGAATAATAAAGCACCATgctgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64133 lncRNA upstream 21649 10844381 ~ 10846286 (+) False AMCG00008752
TU64136 lncRNA upstream 21649 10844381 ~ 10846286 (+) False AMCG00008752
TU64131 lncRNA upstream 63828 10803906 ~ 10804107 (+) True G51252
TU64061 lncRNA upstream 96260 10768653 ~ 10771675 (+) False AMCG00008749
TU64058 lncRNA upstream 149773 10692377 ~ 10718162 (+) False AMCG00008749
TU64180 lncRNA downstream 40432 10951077 ~ 10953420 (+) True G51283
TU64202 lncRNA downstream 109571 11020216 ~ 11024020 (+) False G51298
TU64205 lncRNA downstream 109571 11020216 ~ 11057436 (+) True G51298
TU64199 lncRNA downstream 127696 11038341 ~ 11040674 (+) True G51297
TU64385 lncRNA downstream 555167 11465812 ~ 11466083 (+) True G51446
AMCG00008752 mRNA upstream 21499 10828568 ~ 10846436 (+) True AMCG00008752
AMCG00008753 mRNA upstream 64263 10797771 ~ 10803672 (+) True AMCG00008753
AMCG00008749 mRNA upstream 148619 10692535 ~ 10719316 (+) True AMCG00008749
AMCG00008746 mRNA upstream 242766 10618726 ~ 10625169 (+) True AMCG00008746
AMCG00008745 mRNA upstream 249770 10611383 ~ 10618165 (+) True AMCG00008745
AMCG00008755 mRNA downstream 482 10911127 ~ 10929774 (+) True AMCG00008755
AMCG00008758 mRNA downstream 27594 10938239 ~ 10949947 (+) True AMCG00008758
AMCG00008757 mRNA downstream 39369 10950014 ~ 10950787 (+) True AMCG00008757
AMCG00008759 mRNA downstream 86925 10997570 ~ 11017498 (+) True AMCG00008759
AMCG00008760 mRNA downstream 142097 11052742 ~ 11061279 (+) True AMCG00008760
TU64057 other upstream 160842 10705478 ~ 10707093 (+) False AMCG00008749
TU63913 other upstream 936854 9929478 ~ 9931081 (+) False AMCG00008727
TU63914 other upstream 936854 9929478 ~ 9931081 (+) False AMCG00008727
TU63744 other upstream 1551784 9310086 ~ 9316151 (+) False AMCG00008710
TU64201 other downstream 74245 10984890 ~ 11040674 (+) False G51297
TU64384 other downstream 549718 11460363 ~ 11465488 (+) True G51445
TU64730 other downstream 1804849 12715494 ~ 12716786 (+) True G51734
TU64761 other downstream 1932070 12842715 ~ 12846233 (+) True G51756
TU64826 other downstream 2014593 12925238 ~ 12926794 (+) True G51812

Expression Profile