RNA id: TU64180


Basic Information

Item Value
RNA id TU64180
length 2344
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G51283
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 10951077 ~ 10953420 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACCATGGGGCTCAAACCACCCCTGTCGTTTTCCAACATCCCCCCCGGTGACTCAAAAGGGCGGCTGCAGGTTCTTGATGGGACTGGGGACTTTCTCTGAACTGACTTTGGGCATGTTATGATGCCGTGTGCTGTCTGGTTGGCAGACACAGTCCTGCACCACTTAGTTGTTgaacaaatgtaacaaaagggggaaaaaaaaaagaaaaaaaataataataagcacaacagagtgttttctttcaaaagccCGCAGACCTTTGTTTTCCTCCGCTGTTGTCGAGGGCAGACCCAGCAGCCGGTTGCTGGGTGAGTGTCGTGTGGCAGCCGCAGTGTGTGCGCAGGCGTGTGCTCCTCAGGGTCGCAATGCGGTTCTAGCACAGGTCCACGGTTGGCAGTGTGAGTTTGCATTGGTGTTGCACAAATAAGTCTGAGGCCTTATATAGTCCAGAAATACTTGATGGTACCTTGGCACCACTTGCTTTGCAGTGACTCGAACGAAGGCAGTCATATGAAGTCCAAGGCAGTAacctgcaatacattttaaaggtggACACCCCATGCATAGAGATCTCCCCTTCAGACAGTCCCCACTGGGAGCCGTGTGTCACTGCAGGTAGCACTGCCCTCCCCTTATCTGTGCAGTACCCAGCAGGCTGCCCAGCTGCTCAGACTTGTACTCATCAGTTGTCAAGAGAGGATCAAGTCGGTTGGCAGAGCCGTGTGAGGCGCGCTGGGGTATATAAGCCCGCCCCCGGTGCTGGGTGATCTGCTTTTTAGAGCTTCGTTAGGATGCTTAGTAGAAACGGCTGCAGCCTTCCAAATCCTTCATAGGGGTTGCTACTGAAGCGGTGGGGTTGGGGGTGATACACTACCTAGCCTGAGGAAATTAGGTCAATTAATGGCTCCCGTGAACTAAAACGATTTTTGTCCACTTCCTGCACCACTTGCAACCTGGCATCCCGATCCGTTACCTTTTCCAGCCTGTTGTGTCGGGTCAGAGCATGGCAGCAGCTACACAATCTGATTGGTCCACAGCTCGTTGAATGCTAGTTCAACCTGTCTCAGGTTATGGCTATCGGCGTATATATTTGGAAGCTTCCCTCCCAAACGTCTCGAGGTGTCGTGCGTGAGGCCCGAGCGTTGCGTGTGACAATTTGAACCGACAGCTGCTTTCAAAGAGGCGAGGAAGCCGTCAGCACTGTCTACAGGAGAGAAGAGCTGTTCATTTACACAGCGTAAATGGTCTGCAGCTAATCTCCTGCATGGTACAGTGTTTTGCAGTAGGACAAAATTTgcctccattttctttttttatgtgacTATGTGAAGTTGCAAATCCAGCATAGGTgagaaaaagggaaattaatgtgtttttgtttagcgCTCCTGCTAATTTAACTgtagaaagaaaattaattggTACAGTTGGAACTGATGACATAATTTTGTGACTGTAGTTCATTTTACTTTACAGTGACAATACTCTGTTTGTGTGCGAGAGGTGAACGTGACCCGGTTTAGATAGTCCCGTATAATGGACCAGTGAGCCATATAGGTATCCATACAGGCTTTACCCTGCATAAAATGCCAACAGGGGCGAAGGTGCTTTAGACGAGCCCAGTACCTATTAGCAACAGCCTTCACACCCACCCTGATTTTATACCTGCCAGGCACTTTTATCTCTCAGCTACTCTAATAGCATCTGTGACCCCGTTGCCCCGACCAGTCTCAAGTCCTAGTCCAGTGGTATAGTATGGTTTGATAGACCTGGCTGATGTATAATTTTGTTAGTAACGAGCACAGTCCCCCGATGTACTGTTGGAGTCGTTTATGTAACCACAACTGTCTTGTTTTCCACCATCTTCCTTCCACTCTTTATAGTTGTGTGTGCTTTCCAAACTGCAGCTTTCATTATCCTTCTGCCGTTCCACCCCTTCACTGTACTAGTATAATGGGAACAGGGGCTACGAACTCTATGGGCAGTGTATAGTCCTTTAACGTCAATGTTGAGCTTGACATGGACTTGTTTAACTGGTCGTCATTATAAGGGAGAgtttggaataataataaaaaataaaaataaatcccaacCTGCTGTAGACGGATTGTGCTGTGGTTTGAAGGAACCGTGTAGAAGACTGTTTATCTGTCCAAATGTTTTCTAGAACATGCTGCTGAAAATGATGGGATCACTGTGTATATTTCTCCTTCTAAGCCctttacagttttttgttttgtttgttttgaaaatcagTGTATGAAATCGCTTTCCAAAGATCTGATTACAACTTCTTAGGAAcgaagtgtatatatttttttctctctctctcacactgaaGACA

Function

GO:

id name namespace
GO:0015672 monovalent inorganic cation transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64158 lncRNA upstream 40432 10867935 ~ 10910645 (+) True G51265
TU64133 lncRNA upstream 104791 10844381 ~ 10846286 (+) False AMCG00008752
TU64136 lncRNA upstream 104791 10844381 ~ 10846286 (+) False AMCG00008752
TU64131 lncRNA upstream 146970 10803906 ~ 10804107 (+) True G51252
TU64061 lncRNA upstream 179402 10768653 ~ 10771675 (+) False AMCG00008749
TU64202 lncRNA downstream 66796 11020216 ~ 11024020 (+) False G51298
TU64205 lncRNA downstream 66796 11020216 ~ 11057436 (+) True G51298
TU64199 lncRNA downstream 84921 11038341 ~ 11040674 (+) True G51297
TU64385 lncRNA downstream 512392 11465812 ~ 11466083 (+) True G51446
TU64432 lncRNA downstream 741234 11694654 ~ 11704413 (+) True AMCG00008784
AMCG00008757 mRNA upstream 290 10950014 ~ 10950787 (+) True AMCG00008757
AMCG00008758 mRNA upstream 1130 10938239 ~ 10949947 (+) True AMCG00008758
AMCG00008755 mRNA upstream 21303 10911127 ~ 10929774 (+) True AMCG00008755
AMCG00008754 mRNA upstream 44467 10895042 ~ 10906610 (+) True AMCG00008754
AMCG00008752 mRNA upstream 104641 10828568 ~ 10846436 (+) True AMCG00008752
AMCG00008759 mRNA downstream 44150 10997570 ~ 11017498 (+) True AMCG00008759
AMCG00008760 mRNA downstream 99322 11052742 ~ 11061279 (+) True AMCG00008760
AMCG00008768 mRNA downstream 161604 11115024 ~ 11122159 (+) True AMCG00008768
AMCG00008769 mRNA downstream 190602 11144022 ~ 11152563 (+) True AMCG00008769
AMCG00008770 mRNA downstream 229797 11183217 ~ 11189156 (+) True AMCG00008770
TU64057 other upstream 243984 10705478 ~ 10707093 (+) False AMCG00008749
TU63913 other upstream 1019996 9929478 ~ 9931081 (+) False AMCG00008727
TU63914 other upstream 1019996 9929478 ~ 9931081 (+) False AMCG00008727
TU63744 other upstream 1634926 9310086 ~ 9316151 (+) False AMCG00008710
TU64201 other downstream 31470 10984890 ~ 11040674 (+) False G51297
TU64384 other downstream 506943 11460363 ~ 11465488 (+) True G51445
TU64730 other downstream 1762074 12715494 ~ 12716786 (+) True G51734
TU64761 other downstream 1889295 12842715 ~ 12846233 (+) True G51756
TU64826 other downstream 1971818 12925238 ~ 12926794 (+) True G51812

Expression Profile