RNA id: TU64262


Basic Information

Item Value
RNA id TU64262
length 1217
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G51344
representative False

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 11057677 ~ 11140273 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCAAATACAGTAACATCTGAGCCACTGATTCGATGAAGCTATCAAGAATAGGAAGGCTGTGAAGGGCTCTCCTGGACAGGGCACTGTGGCGACCTCAACCCCTCTGATGGGGGCAGTCTGGGCTGTAGACTTGGCTCTTCCTCAGGGCAGCTCCCATTCCAGTCGGGATTCTTTCCTGGTGGGATGGGTTTTCCCTCTGTCACTCTTGCTGCCCATTGGGTCAGTAGGCCCCTCCATCGTCCTGTAAATCTTCAGGCTCCTTTCGATCGGCCGGAGATATCCTTAACAGCGGCTGGGCGGTGGCTCTCTGGGATCCTGGTGGGGTCCTTGCTGTAGTGGTGCATCTGCGGGCTGCCCTGGGCGCTCAGAACCTTTGCGTAAGGCGGGGGATGGGGGAGCGGTGGTGGCTAGCCAAATTTAAGCGTGGCTTCAGGGCAGGGAGGCCGGCGAACGGTGTGAAGAAACCTACAGAGCCTGCAGGACTGACTGTTgctctccaggagcagggccCACCCCCCTGGCAGCTGGCTTTCCGGGGAGGAGGGTCACCACCTTTAGTGATCATTTGAAATCCTCAAATCCAAAGTCTTTCCTCTAGCTAAATATGGAAGGAGAGGACAGAGGAGGACCAAGGGAATGGTTTTGAGAAAACccaacccccaccacccccttcaatagatagatatatgtaataaatacaataatctgTCCAGCACCCTCCGTTCTCTAGCTGCCCCCGCTGTTCTCTCCTGCTCAGACCACCGGACTTGCCTTGGGATAAGCACTTAAAGCGCAAAGGGCTGACTTTTAAACCACGGCTGGAAAGGCAGTCTGAGCAGTCAATGCAGAAAACCAAAGCATCGCAGTGGAAATCCCTCCGTGTATAATCTGACTAATTTGCCCCCCCCAGCTCCACGTTTTTCACCATGGTGCCAACGgatgcttgtttttattttcattttttttttttttttttttttttatataaaagttaTTCCACTGCTCATACACAGCATATTTATTCTCCACTTTGTTTATCTCGGACAGCTGTGGTGCTCTCACTTTGTCAAATTCTGGTTTATACGTGCATATACCGTAGCAGAGTTTTTGATATGTAATCATTTAGCAGAAAAGAAATTACTATTTTTGGacgagtttttttgtttttgtttttttttgtatgtatgtattggagaattattaaattgtaatgcCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64148 lncRNA downstream 218018 10839106 ~ 10839672 (-) True G51261
TU64129 lncRNA downstream 253981 10801108 ~ 10803709 (-) True G51251
TU64130 lncRNA downstream 253981 10801108 ~ 10803709 (-) False G51251
TU64107 lncRNA downstream 345205 10675756 ~ 10712485 (-) False G51241
TU64280 lncRNA upstream 103420 11163346 ~ 11164374 (-) True G51354
TU64337 lncRNA upstream 166561 11226487 ~ 11258218 (-) True G51403
TU64527 lncRNA upstream 942999 12002925 ~ 12010394 (-) True G51574
TU64548 lncRNA upstream 1021286 12081212 ~ 12093785 (-) True G51588
TU64607 lncRNA upstream 1283214 12343140 ~ 12343342 (-) True G51634
AMCG00008764 mRNA downstream 6264 11044963 ~ 11051426 (-) True AMCG00008764
AMCG00008761 mRNA downstream 13571 11038302 ~ 11044119 (-) True AMCG00008761
AMCG00008763 mRNA downstream 21963 11021548 ~ 11035727 (-) True AMCG00008763
AMCG00008765 mRNA downstream 46119 11004156 ~ 11011571 (-) True AMCG00008765
AMCG00008756 mRNA downstream 85311 10958584 ~ 10972379 (-) True AMCG00008756
AMCG00008762 mRNA upstream 2361 11062287 ~ 11073591 (-) True AMCG00008762
AMCG00008767 mRNA upstream 74260 11134186 ~ 11143361 (-) True AMCG00008767
AMCG00008766 mRNA upstream 90993 11150919 ~ 11171928 (-) True AMCG00008766
AMCG00008772 mRNA upstream 150260 11210186 ~ 11221258 (-) True AMCG00008772
AMCG00008773 mRNA upstream 173566 11233492 ~ 11250237 (-) True AMCG00008773
TU64128 other downstream 258536 10797632 ~ 10799154 (-) True G51250
TU64119 other downstream 339489 10677263 ~ 10718201 (-) False AMCG00008748
TU64340 other upstream 175716 11235642 ~ 11295750 (-) False AMCG00008777
TU64350 other upstream 260884 11320810 ~ 11326359 (-) False AMCG00008777
TU64811 other upstream 1830885 12890811 ~ 12891597 (-) True G51797
TU64813 other upstream 1835409 12895335 ~ 12897134 (-) True G51799
TU64897 other upstream 1940900 13000826 ~ 13001888 (-) True G51867

Expression Profile