RNA id: TU64384


Basic Information

Item Value
RNA id TU64384
length 5126
RNA type TUCP
GC content 0.50
exon number 1
gene id G51445
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 11460363 ~ 11465488 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCACAAGTTGaccatctatttatttataaaccagtaaaatataatacatatgtataaaaacatgacaaaaatgttcacaaaaatatatcaCTTGAGTTCCTGTATGGATGCAGTAAATGCtaacattattaaatgttctTTTGCCAGCAAAAAGTTCAGTTGAACTGTGAAAGGTAAGACActgtaaaaatgcatacatcacAACATTACAGGACATTTAAAAAGTGACCTTTCTCTATATGAAAGTCATTACATTCTATGTAacatctttatataaaaaaactgaGCAGTTATGGGTTGTagtctttttaaaaatctatatacttttatgtgcattttatttatttttcaatcaaaaTCATCTTTGGTTCCCAAAATACAGAATGTAGCGTTTGCTAAATAAGACATTGAGGATTCGGGCTGGAAGACATCTTCCAGTGGACtttaaatgaatataatatGCGTCCTGCTGGGATTGCAGTGTCACTCAGGTTCCTTCAACCCTACACCGGTAACACTAGTCCTAGCTAAGACTTCGTTAGTTGGTACCCTGGATCAATTCATCCTGAGGCAGTGAGGACATGACTGGCACCCTGTCTTATTCTTATGaacagaaaagtttttttttttaatgactttcaaCAATCCATGGCAGTTTGAGAGATGTGGCCCATGTGAAAAGGCTACATCTCGCAAAACACCACATGCTGAAGCACAGTGTTGTTTCTAAGGCAcggtatgtgtgtgtttgtatttcatttgtgttaCTTGAGTCTTTGTGATTGTAAAGTGGCACAGTGGTAGGTAAGGGGGAAGGCTGGTTGTGTTGTtacagtacataaaaaaaaaaaaaaaactgctctaGAAGATTACAATTAGAAATCAACTGTCAGCAAGAGATGGATGAATGGTCCGTGAAGCCTTCTGAAAGACAGGACGCAGTTCTGAGTACACTAGCTGTGCTTCTAGCATTAGCTTTTGTAAAGCAATTGCAggatgtgtgtatttaaactCGAGGTAATTAGGATACGTTTTTTTAATCAAGCCCTTATTGTGTCTGTTTATAgtacaagcaaaacaaacaaacaaatagcaCAGTGGTAAATGCTGTGAATACTgctaaagaaatatatttgttttcttccatgcTTCCACAACTGAATGCCTAAAGAAGAGAGTCTGTCTGATGCGTCACATGATGTCGAATGGGCCAATCAGCAGACTCACTGTGCAGTGGTTTAAGGCAAAGGGGTTGGGGCAGACAACTGCCACTGTGATTTGTTGCGGGGAAGAAATGAACACTCGGCAGAAATGGCCTTGGGTAAAGTTTCCTGCTGtcactttaaaacatgaaacatgcaAAGTACAAACATGACACAGTTATGAAATTTCAGGAGAATCCATCTGAAATGCTGAGgctgtctttctctcttcaGAAGGGGAATTCGAGGCCTGGTCTATATTTACAGCCAAACACGGTGCTTTGTACATAGTACTTCTTCAGACCTCAGTCTTGGGGGCAATCACCTTGAACAGTGTTTCTTTTAGGaaatttcactttgttttttaatcaatactGTTTTTGTCCAATGAATGTTACAAAGCAGCTGAAATGTAACCGAGTCACTGCACACGATGTGTGTCCACCATGTGACATGCTGTTATTGGGTTACAGTCTCTGTGTGCAccactcctctccctctcataGCTGGAGCACCTGACATTGTATTGTCCAGGATTGTCTGTCATGTAGGCACAGATGGAGGTAGACCACAAATTGCTGGATGCATCAATGGAAGTCAAAGGCACTTACTCTTGAAATATGCAGCTTTCTATGCATGCTTTCTTTGTGAGTCCGGCAGTTATGTTCCTGCACTGAAGAGCTGTCACGGAAAATATACTGGCGTAGAGGATTTGCTTCATCCCATCACACCTGTGGATTTAGCCGAGATGTTGGTGTGGATCccaaagctttattttctccaaCTCCGTTTGGACGTGTCCTAGTGCTATAAATGATGCTCTGGGATATTCCCATGGGACAATATTAGAAGCtgatttttgtctgtttgccaTTGCTGTGACTCTTCTCAATGACAGCCCATTCAAATATTTACCCAACAGTTTCAAAAGTGAATTCTTATTAGGAGTCCTTaccttctgaaatgtttttcttttataatgatgataaaaaaacagattgtgTAGAACGGAAGTTGTGCTCGTCAATGTCTGCACTGGTAGCTTCTACATATACACAGCATATCTatttacacaaaatgtaaactttGTAGCCCCTCCTGCATTCCTGTCTCTTTTATCTGCCATGATTTGGCAGGATTTGGTTGCATCACCTTGAGACCAAACCAGGCGTCAAGGTCTACCAACCGTCAAGCAACAACTTAGTAGTCTTGACAAAAATCAGTTCCTCTTTGAAGCCGTGTGAGAGAGTGTCCAAATGGCACCTATTCTTTGGCTTCTGAGACAGTGTATTTAATGCAGGGAGGGGAATGTGTTTGTGCACGTACGTTTCTCAGATTCGAGGTCTGCCTTTTTTCTACGACAGGGTGTTGAGATATTTGTTCTCCCCAGCCAGAGAGGTCAGGATGGAAGTCATGTCGCCCACAGCCATGTTGGATAGGCTGGACTGCAGTGTGAGGGAGTTGCGTGGGGTGGTGAGGCGAGAGGATGTCTGGGAGGAGCCCTGGAGAGGGTGCGGACTGAAGGACCCCGGCATCATGGAAGAGGATGGGTCCGAGTCATCAATAATGGCAGCAAAGTCTATCTGCGCATTCTCCAGGTCCAGGTTGTCTAGAGCATTGGACATCTGGACAGGTTCAGGGTATGCTAAAGACGCAGACTTATTTTGATCCATTTGGCCCAAGTGCGGCTGGCTCATGCAGATCCCTTGCTGGGAGTCCTGCCTGCTCAGCTGTTTCCCCATATCTGGATGCATCTGGATCTGCGCAGAGTAATACATAGTGTTGGAGatggtgttgttgttgctgcccGGAGGGGGGCCCGGGGTTAGCTCAGGATGCGGTGGCACGGGAGGCAGTCGGATATTCCTCCTGGGGCTGGTGGAGGTCTCATGTCCAGGGCTGAGGTGAGGAGGGCTGCCCAGGTACCCGGGCTGATGGGTCTGGCTGTTCTGTCGACTTATAGGTTTGCGCCCCTGTGGGGGTCTGGGCACGAGGTCCTGGCTGTAGCACTGGCTGTTGGGGCTCAGTAGGTCTTTGGACTGAATGGAGCTTGCTCCCCCGTTGTGTGACGGACTCATGAGGTTCTGGTTCTGGTAGCCCATGtagttgctgctgctgtaagCATGCTGCTGCTGGGGGCTGTGCTGCATCATCTGGACTGAGCCTCCCATCTCCATGCCGTCCACCAGTGGGGGTTGCGGGGGAGGTAGAGGCATGCCCATCTCACTCCGCTCTTGCTGGTGTTGCTGCTGCTCCCACATAAGTGCCTGTTGCGACTGCACGTAATTCCTCACCATCATCTCCTTCACCTGCATCATGGGGGTCTGGGAGCGCCGCCCGTCCCGGAGGGGTGACCCACACACCATCCCAGAGGAGCCCATACCTGTGCTGGGGAAGGCCACTGGCTGCTGGTTATCCAGCTGCCCTTGGAACTCACAGCTTGCGGCTCCCggcctcatcatcatcatctgccCTGGCGGCCCATAGCCCTGTGGAGCAGGCATGGGCTGCTGCTTCATGTTCTGGCAGGCATTCGAGGACTGGAGGGACTGGTGGAACTGCTGCTCAGGCTTGATAGCCTGCTGAGGCGGGACTTTCTGCGTGTTGTTGTTAAACATGGCCTGCTGGCTGTGGCCAGCATTAGACACGGTTAGACCACTGTGGTTCTGCGGTGGGTGCTGGATTGCAGACCTGTGGTCCTGATATTGCCCAGCGCCCGCCACCATGGCCGGCTGCAGCCCGTGTGGGTTCTGGTGTTGGGTCACGACGCTTGGGTTTTGCTCACCCCACTGTCCTGATAGGCTCTCGTTAGCATTAATTGGTCCCATGTTTGTGTACTGAGGGCCAGAGGGGCTCAACTGGCAGGTGTTCAACCCATACTCCGCCTGCTGCATCATGGTGCTCATCCCCCCCTGATGGATGACGTCCACCTGTGCGCTTCCCATATCCCTGCGCTGGCTGTGAAACAGCCCTTGCATTCCCACGGCCGGGTAGCCACGCTCGTTGCAGTTTAGGTTCTCGTGACCAGGGGACAGCTGGCTAGATCCCTGGGGGTAACCCATGTATCCCATGCCTTCACCGGGATTCATCATAATGTTCGGATCCCTTGGCTGGTTGTTGGCAGACGAGGGCTCCATTGTTGCCATGGCCTCCAACATGACGTTCTCAGAGATGCTCGGGGGACGAGGCGAGTACACATGGCGGGAAATGTTGGCTTCAGACCCTCCGAAATGCTGCAGGGTGCCAGTGGTGGCGTTCCTCCGGCCCATCATGGGCATGTTGACGTTGTTCAGGCTGCTGAAGCGCTGGACTTTGGGCACAGCTTGCTGATCGGCCCCAGACCTCACTGGGTCACTGGCCCTCCGCGCCACGTTGCCTGGTGCCTGGTGCGGGTGGATGATGCCTGTCCCGTAACTGCTGTAGTCATTGGCGCTGTTCCTGCGGTTGACCCCTTGCTGTAAGAATGGGGGCAGCGGCTGGCCGTGGAACTCGCTCATGAACCCCATTCTAGGGTTGGGCCCGGGGGGCTCCATGTTGGGTAGAGGTGTTGGGGGAGGCCCACCTGTGGCTGCTGCATATTTGGCCTTTAAACTGTATTGCTGTGCAGGGGTCAGGTTTGGGAGGCCTGGCAGCCCCCCTGTCCCTCCCCTGCACACCCCTGATCTCCGGCTGGATTCAGGGGAGTTGGGGTCCCCAGTGTCCTTGCCCAGGATGTTCTGGGGATGTCCTCCGATCAGGGACACATCACTGGAGCGGCGGCTGGAGAGGTAGGGCGAGACGAGGGAGGAGCGGCGGCTGACAGTGTAGGCGGAGCTCACGCTGCTGGTCCCACTGTTGCGGCGCTCGTTGTGCGGCCCTGGGGCCCCCAGGTCTGTGTTGGACAGCTCCATCACGCGACGGTTCGACAGCATGGGCGACGGCCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64205 lncRNA upstream 402927 11020216 ~ 11057436 (+) True G51298
TU64199 lncRNA upstream 419689 11038341 ~ 11040674 (+) True G51297
TU64202 lncRNA upstream 436343 11020216 ~ 11024020 (+) False G51298
TU64180 lncRNA upstream 506943 10951077 ~ 10953420 (+) True G51283
TU64158 lncRNA upstream 549718 10867935 ~ 10910645 (+) True G51265
TU64385 lncRNA downstream 324 11465812 ~ 11466083 (+) True G51446
TU64432 lncRNA downstream 229166 11694654 ~ 11704413 (+) True AMCG00008784
TU64429 lncRNA downstream 247224 11712712 ~ 11716482 (+) False G51483
TU64430 lncRNA downstream 247224 11712712 ~ 11716482 (+) True G51483
TU64537 lncRNA downstream 596586 12062074 ~ 12062289 (+) True G51582
AMCG00008778 mRNA upstream 68334 11369713 ~ 11392029 (+) True AMCG00008778
AMCG00008775 mRNA upstream 124142 11331875 ~ 11336221 (+) True AMCG00008775
AMCG00008774 mRNA upstream 169063 11279912 ~ 11291300 (+) True AMCG00008774
AMCG00008771 mRNA upstream 262611 11189422 ~ 11197752 (+) True AMCG00008771
AMCG00008770 mRNA upstream 271207 11183217 ~ 11189156 (+) True AMCG00008770
AMCG00008783 mRNA downstream 102370 11567858 ~ 11599637 (+) True AMCG00008783
AMCG00008782 mRNA downstream 136927 11602415 ~ 11618855 (+) True AMCG00008782
AMCG00008784 mRNA downstream 229353 11694841 ~ 11704408 (+) False AMCG00008784
AMCG00008787 mRNA downstream 367798 11833286 ~ 11834344 (+) True AMCG00008787
AMCG00008791 mRNA downstream 517290 11982778 ~ 12002806 (+) True AMCG00008791
TU64201 other upstream 419689 10984890 ~ 11040674 (+) False G51297
TU64057 other upstream 753270 10705478 ~ 10707093 (+) False AMCG00008749
TU63913 other upstream 1529282 9929478 ~ 9931081 (+) False AMCG00008727
TU63914 other upstream 1529282 9929478 ~ 9931081 (+) False AMCG00008727
TU63744 other upstream 2144212 9310086 ~ 9316151 (+) False AMCG00008710
TU64730 other downstream 1250006 12715494 ~ 12716786 (+) True G51734
TU64761 other downstream 1377227 12842715 ~ 12846233 (+) True G51756
TU64826 other downstream 1459750 12925238 ~ 12926794 (+) True G51812
TU64845 other downstream 1515316 12980804 ~ 12992492 (+) True AMCG00008837
TU64968 other downstream 1756832 13222320 ~ 13224946 (+) True G51928

Expression Profile