RNA id: TU64385



Basic Information


Item Value
RNA id TU64385
length 272
lncRNA type inter_gene
GC content 0.64
exon number 1
gene id G51446
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 11465812 ~ 11466083 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CCGGTAGCTTGGCGTTGCGGTTGGGGGGCGTGGGCCGGCGAATCTGTTTCAGCTTGTCGATCTTGAGGTTCTCCAGCCTCTTGAGGGCCTGGGCAGACATGCCCGCTGTGCCCACGCTGTCGCTGGCCACGCCCTCCTCCAGCACAGTCAAGTCCTCTAGGCTGCCTCCTGCATTAGCGTTCATCTCCACTCCGCTGTCGTTGTTGTTGGCGCTCCCTAGTGGTGACCTCTCACTGCTGCAGGAGGACTGGCCTCCCGGGCTGGGCTGGGAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU64205 lncRNA upstream 408376 11020216 ~ 11057436 (+) True G51298
TU64199 lncRNA upstream 425138 11038341 ~ 11040674 (+) True G51297
TU64202 lncRNA upstream 441792 11020216 ~ 11024020 (+) False G51298
TU64180 lncRNA upstream 512392 10951077 ~ 10953420 (+) True G51283
TU64158 lncRNA upstream 555167 10867935 ~ 10910645 (+) True G51265
TU64432 lncRNA downstream 228571 11694654 ~ 11704413 (+) True AMCG00008784
TU64429 lncRNA downstream 246629 11712712 ~ 11716482 (+) False G51483
TU64430 lncRNA downstream 246629 11712712 ~ 11716482 (+) True G51483
TU64537 lncRNA downstream 595991 12062074 ~ 12062289 (+) True G51582
TU64539 lncRNA downstream 609405 12075488 ~ 12077513 (+) True G51584
AMCG00008778 mRNA upstream 73783 11369713 ~ 11392029 (+) True AMCG00008778
AMCG00008775 mRNA upstream 129591 11331875 ~ 11336221 (+) True AMCG00008775
AMCG00008774 mRNA upstream 174512 11279912 ~ 11291300 (+) True AMCG00008774
AMCG00008771 mRNA upstream 268060 11189422 ~ 11197752 (+) True AMCG00008771
AMCG00008770 mRNA upstream 276656 11183217 ~ 11189156 (+) True AMCG00008770
AMCG00008783 mRNA downstream 101775 11567858 ~ 11599637 (+) True AMCG00008783
AMCG00008782 mRNA downstream 136332 11602415 ~ 11618855 (+) True AMCG00008782
AMCG00008784 mRNA downstream 228758 11694841 ~ 11704408 (+) False AMCG00008784
AMCG00008787 mRNA downstream 367203 11833286 ~ 11834344 (+) True AMCG00008787
AMCG00008791 mRNA downstream 516695 11982778 ~ 12002806 (+) True AMCG00008791
TU64384 other upstream 324 11460363 ~ 11465488 (+) True G51445
TU64201 other upstream 425138 10984890 ~ 11040674 (+) False G51297
TU64057 other upstream 758719 10705478 ~ 10707093 (+) False AMCG00008749
TU63913 other upstream 1534731 9929478 ~ 9931081 (+) False AMCG00008727
TU63914 other upstream 1534731 9929478 ~ 9931081 (+) False AMCG00008727
TU64730 other downstream 1249411 12715494 ~ 12716786 (+) True G51734
TU64761 other downstream 1376632 12842715 ~ 12846233 (+) True G51756
TU64826 other downstream 1459155 12925238 ~ 12926794 (+) True G51812
TU64845 other downstream 1514721 12980804 ~ 12992492 (+) True AMCG00008837
TU64968 other downstream 1756237 13222320 ~ 13224946 (+) True G51928

Expression Profile