RNA id: TU64429


Basic Information

Item Value
RNA id TU64429
length 2677
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G51483
representative False

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 11712712 ~ 11716482 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGAAACTTCCGCCATATCTTATCAGAATGATCCTCTTTATTTAACACTATTTGGCCATGAAGATTAACAGCTGtaagttaaaaaaacagaacactaTGCAcaaaaattaattcaaattaattactgTACAGTCAGCATTCCAACATCTTGTATGCTGTAGAACTTCATGATGTGTAAATATTACAGATGTCCTTTCACCCCCCCTGCCCAAGTTAAATTCATTCCCGTTTGTTACTGATGGGGGTGTACAGTTGCCCTCCCCAAAACTagaagtaaaaaacaaaaatattagtCTAATTTCAAATTACTGACTGCAAAATCACACAGGCGATGGGGCAGGGGCAGAAAAAGTTCTACAAAAGCATCCTATCCTGACCAGCTGTGATCCTACTGGGTGTATAGGATACCTTGTATGGTAGATCCCAAGCAAAACTCTTTCAACAACGCTGCACTAAGTGATATCAGAAGCATGATTTAAGATTAAAGTTTCATGATCAAAGCTTGGTCAGATCACATGGATTCATGATCCTATAATGTCCAGTGAAGATAGCATTGGACCATTTAGCAGAACCATATCAGTTGGACTGCTTGGGATGAAATTAATTGGATCCTTTCATCTTGGATAGACATCAAAGATAGACGTCCATTATTCAAAATTCTGTTTCTTGCTCTACAGCTTGATTGTGTGCTTTAGTAACCAGCCCTAATTATGCAAGTTGATCAAGAAAGATTACATTATTGTTTTCCCCTCCCACAACATTTAAAGAACCtgccataaaaaaacaaaacctaaattaAGTGGTTTAGGCagcataattttttttttttttacaaaacaaagctGGCTATATACTGCTTTGTTTAGTATATgcctgtatatttgtatgtaaatatactgtgtgtatatattttatatataaaacatacacacacacacacatatatataatacaatacaatacaatacaatacatttaatctaggtgcaatgtttttatgaaaatttgtattcagttacaaaaatttaaaaaatgcaataataaaaaaaaaaaactattgggTTAATGAGAGATCTAAGAAAtgattataaatgtaaacagatgTCCAATGACAATGGGGAAAGACGTTTTTTGCAGATTTCAGAGCACCGGGTCCCAGATGACCCAGGTTACCattggaagattttttttattttttattttttgttatacacacgcacctccaaaaaaaaagatattacTCTTTCTGACAGAGGTCCCAGCCCCTGTAACCATGTTCAATTAAAGATTCAGTCAAAATGACACTGCAGAGCTGTTTAAAGATGGTTTGTCAACAATATCTAAAACTAAGAAGTTGCAAtatgtatgtagtgtgtgtgtatgtgtgtatatatatatatatatatgtatattatagtaATTAATCTTAGTAGACACTAAAGTGTCACACCGAGACTAGGCGGTGTTCTAAGTACCAACAGCTGCTAAGTgataatagaaataatatattgtgatTATAATTCATAATATAGACCACCATGGGAACTTGTTGTGCATTTGATactaattgattttaatttaatcctccAGGAAAGGGAAGACAGGTTTTGTcacagaggaagagggggaaactGCTGCCTCTGGATCGCCAGATTCCACACAAAACACTCCCAACCCCAAGCTGAAATGCACATACGTGTGCAGACACCCCCTGGAGTCTCACAGCTGTCCGTGGCCCCGGACTGAAGACTGTATAATCACAGGCAAAGATGACTATACTGACATGTAGGCTTCCTCAggactaattaattaattaattaattaattaattaattaagtcacACCTTAAGAGAACTCCAGGGCTCCTAATAAGGCTCAGTTGAGGTTAATTAAGTTCAATCACAAATCCAAGAGTGTCTGAACACAATAAACtgcttttcttaaattattcattttcataatttctaatatatatatatatatatatatatatatatatatataatgtatcacacacacatacacacacacacgatatATACTTTTCCTCCTCATTTTAGCAGGAGTGGTGGTTCATTACACGGAGGTTACTGAACAGCCTGCTGGGAAGGGATGTCTGTAGCCTGTGGTGAGTGGAATGGGACACCTGCGGCCTGGCAGTCCCTTTAAACAAGATCCCGGCTCAGTGTGAGACGGGCACAGCGCTGCTAACACACGGCCAGCACTGCCATTTGTTTTCCAGACAGTTCAGAAGGATCACGCGTGGAGGACCAAGTAAAACAGGATTCAAAACAGAAGGTGCCTTAGTCTTTTTGTCAGTCAATCAGAGATCAGAAGGCTGGGACGATGGCAGCAGGGTGGATTTGTTGCTCCACTCTGTGTGAGatgctcctctctctctccctctcttaccCCTTTCTCCCCATTTTCCTCGGGGCTAGTGATCCTGGAACCCAGGCATGGGGAAGGAACGGGCAAACTTCTCCACACGCTGCCTCAGGTCTGCAATCTTGGCCTTGGTCTCTGGGTCCTGCAGGAGGAAGTTCTTGAAGTCTTGGAGCTTAGCTGGAGAGCAGAAGGagCAGAGCGTCGGACATGGACTTCGCGTTACGGAGGACCTGGGCAGCATAATCCTTGAACATGGGGGAAGCAGCCTGAtgggagagagtgaaagagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64432 lncRNA upstream 8299 11694654 ~ 11704413 (+) True AMCG00008784
TU64385 lncRNA upstream 246629 11465812 ~ 11466083 (+) True G51446
TU64205 lncRNA upstream 655276 11020216 ~ 11057436 (+) True G51298
TU64199 lncRNA upstream 672038 11038341 ~ 11040674 (+) True G51297
TU64202 lncRNA upstream 688692 11020216 ~ 11024020 (+) False G51298
TU64537 lncRNA downstream 345592 12062074 ~ 12062289 (+) True G51582
TU64539 lncRNA downstream 359006 12075488 ~ 12077513 (+) True G51584
TU64544 lncRNA downstream 362215 12078697 ~ 12080204 (+) True G51586
TU64579 lncRNA downstream 474251 12190733 ~ 12249909 (+) True G51614
TU64639 lncRNA downstream 709451 12425933 ~ 12426222 (+) True G51665
AMCG00008784 mRNA upstream 8304 11694841 ~ 11704408 (+) False AMCG00008784
AMCG00008782 mRNA upstream 93857 11602415 ~ 11618855 (+) True AMCG00008782
AMCG00008783 mRNA upstream 113075 11567858 ~ 11599637 (+) True AMCG00008783
AMCG00008778 mRNA upstream 320683 11369713 ~ 11392029 (+) True AMCG00008778
AMCG00008775 mRNA upstream 376491 11331875 ~ 11336221 (+) True AMCG00008775
AMCG00008787 mRNA downstream 116804 11833286 ~ 11834344 (+) True AMCG00008787
AMCG00008791 mRNA downstream 266296 11982778 ~ 12002806 (+) True AMCG00008791
AMCG00008798 mRNA downstream 396902 12113384 ~ 12126602 (+) True AMCG00008798
AMCG00008795 mRNA downstream 416004 12132486 ~ 12143358 (+) True AMCG00008795
AMCG00008800 mRNA downstream 513045 12229527 ~ 12235458 (+) True AMCG00008800
TU64384 other upstream 247224 11460363 ~ 11465488 (+) True G51445
TU64201 other upstream 672038 10984890 ~ 11040674 (+) False G51297
TU64057 other upstream 1005619 10705478 ~ 10707093 (+) False AMCG00008749
TU63913 other upstream 1781631 9929478 ~ 9931081 (+) False AMCG00008727
TU64730 other downstream 999012 12715494 ~ 12716786 (+) True G51734
TU64761 other downstream 1126233 12842715 ~ 12846233 (+) True G51756
TU64826 other downstream 1208756 12925238 ~ 12926794 (+) True G51812
TU64845 other downstream 1264322 12980804 ~ 12992492 (+) True AMCG00008837
TU64968 other downstream 1505838 13222320 ~ 13224946 (+) True G51928

Expression Profile