RNA id: TU64544


Basic Information

Item Value
RNA id TU64544
length 521
lncRNA type inter_gene
GC content 0.47
exon number 6
gene id G51586
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 12078697 ~ 12080204 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACCGTTAAAAAGGAGACCTTGTAAACAGTGGTGACATTGAGAGGAAAGCTGCCATTTTGTTGCGTCTGCTGACTTCTTCACCCAGGTTCTTTCTAAACATATATTCACACTGTCTGTCTTTTGGCTCGCCTCAGCATGAGGCCTCAGGATGGACATGGACATGTACATGGAGAAGAAGTATTCAGAGCCCCAGGCTGTATTTTCTGCTGCCTGTGTGGTGCTCAGACTGGAGTGCCAGCACTGTCACAACATCGCACACAGGTATGGGGTTCAGCGATTGGGACCCGGACAATCCGCGGGACCCCCCAGTTTATGGCTGTAGGATTGCGCTTATTGCAGCCATGAATTTCCTTTCTATTCTATAATTGATCTGCTTTAATAAGTCATGTCTCAGACTCCTTTCTCCGGTGACAATTTCCTCGAGGTGGTTGACAAAATTGTGAATGATGAAGTGCAATATCCCAAGTTCCTATTTGCAGATGCCTGCTCCGTCCTGATAGGGCTTCTGGAGAAAGATCCCN

Function

GO:

id name namespace
GO:0007267 cell-cell signaling biological_process
GO:0198738 cell-cell signaling by wnt biological_process
GO:1905114 cell surface receptor signaling pathway involved in cell-cell signaling biological_process
GO:0016055 Wnt signaling pathway biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64539 lncRNA upstream 1184 12075488 ~ 12077513 (+) True G51584
TU64537 lncRNA upstream 16408 12062074 ~ 12062289 (+) True G51582
TU64429 lncRNA upstream 362215 11712712 ~ 11716482 (+) False G51483
TU64430 lncRNA upstream 362215 11712712 ~ 11716482 (+) True G51483
TU64432 lncRNA upstream 374284 11694654 ~ 11704413 (+) True AMCG00008784
TU64579 lncRNA downstream 110529 12190733 ~ 12249909 (+) True G51614
TU64639 lncRNA downstream 345729 12425933 ~ 12426222 (+) True G51665
TU64647 lncRNA downstream 358647 12438851 ~ 12439523 (+) True G51673
TU64660 lncRNA downstream 423712 12503916 ~ 12504176 (+) True G51685
TU64650 lncRNA downstream 467856 12548060 ~ 12549618 (+) True AMCG00008810
AMCG00008791 mRNA upstream 75891 11982778 ~ 12002806 (+) True AMCG00008791
AMCG00008787 mRNA upstream 244353 11833286 ~ 11834344 (+) True AMCG00008787
AMCG00008784 mRNA upstream 374289 11694841 ~ 11704408 (+) False AMCG00008784
AMCG00008782 mRNA upstream 459842 11602415 ~ 11618855 (+) True AMCG00008782
AMCG00008783 mRNA upstream 479060 11567858 ~ 11599637 (+) True AMCG00008783
AMCG00008798 mRNA downstream 33180 12113384 ~ 12126602 (+) True AMCG00008798
AMCG00008795 mRNA downstream 52282 12132486 ~ 12143358 (+) True AMCG00008795
AMCG00008800 mRNA downstream 149323 12229527 ~ 12235458 (+) True AMCG00008800
AMCG00008799 mRNA downstream 156427 12236631 ~ 12237359 (+) True AMCG00008799
AMCG00008804 mRNA downstream 257682 12337886 ~ 12338736 (+) True AMCG00008804
TU64384 other upstream 613209 11460363 ~ 11465488 (+) True G51445
TU64201 other upstream 1038023 10984890 ~ 11040674 (+) False G51297
TU64057 other upstream 1371604 10705478 ~ 10707093 (+) False AMCG00008749
TU63913 other upstream 2147616 9929478 ~ 9931081 (+) False AMCG00008727
TU64730 other downstream 635290 12715494 ~ 12716786 (+) True G51734
TU64761 other downstream 762511 12842715 ~ 12846233 (+) True G51756
TU64826 other downstream 845034 12925238 ~ 12926794 (+) True G51812
TU64845 other downstream 900600 12980804 ~ 12992492 (+) True AMCG00008837
TU64968 other downstream 1142116 13222320 ~ 13224946 (+) True G51928

Expression Profile