RNA id: TU64647


Basic Information

Item Value
RNA id TU64647
length 673
lncRNA type inter_gene
GC content 0.28
exon number 1
gene id G51673
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 12438851 ~ 12439523 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

actgcaataaaatgtaaattacttattttttaaaacaaaaatctcctTCAAAGGGAATTCTCACTATtcaatcttattattattattattattattattattattattattattattattattattattattattatgtaggatgtttttttcttgagtCAAGGAGACAAAGAAACATGGTTGATGTTTTAAACTCTTAGCCAGCTACCAAGTAGCCAAAATTCAACTGTTACTCTGTCACTACCTAAATCAATGAAAATACGTTTTCTGTTTAAGAAGTACACTAATCAATTTTGTTGctgcttatttttattcatCCCCCCCCCAACAACTTAAACTGCCTAGAAAACGCACACTTCTGTGCTAAATGTTACAAGTACTatatttagaattattttataattataattattattttatcgtGCTGATGGTATAGAGTAGAACTAAATTGCACTGAATATAATCTCACGTAtgtccttatatatatattgttgtttgcAATATGCTCGTTTTGTTggtgtttcttatttttaagtgGGAAAAGTTGAGTGTTCACTACCTGAATGTTtagaggaaaaaacacattaaaaaatgtaagatgACTTTTTCCTTCACCCGTCCTTTTTGTCATGTATTCGTGTTGCGCtgagaaaataaactgattttaaacgAG

Function

GO:

id name namespace
GO:0005540 hyaluronic acid binding molecular_function
GO:0031406 carboxylic acid binding molecular_function
GO:0043177 organic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64639 lncRNA upstream 12629 12425933 ~ 12426222 (+) True G51665
TU64579 lncRNA upstream 188942 12190733 ~ 12249909 (+) True G51614
TU64544 lncRNA upstream 358647 12078697 ~ 12080204 (+) True G51586
TU64539 lncRNA upstream 361338 12075488 ~ 12077513 (+) True G51584
TU64537 lncRNA upstream 376562 12062074 ~ 12062289 (+) True G51582
TU64660 lncRNA downstream 64393 12503916 ~ 12504176 (+) True G51685
TU64650 lncRNA downstream 108537 12548060 ~ 12549618 (+) True AMCG00008810
TU64687 lncRNA downstream 119948 12559471 ~ 12559699 (+) True G51710
TU64697 lncRNA downstream 207000 12646523 ~ 12647964 (+) True G51718
TU64731 lncRNA downstream 281559 12721082 ~ 12722980 (+) True G51735
AMCG00008806 mRNA upstream 3788 12434623 ~ 12435063 (+) True AMCG00008806
AMCG00008807 mRNA upstream 15445 12422714 ~ 12423406 (+) True AMCG00008807
AMCG00008809 mRNA upstream 23746 12399412 ~ 12415105 (+) True AMCG00008809
AMCG00008808 mRNA upstream 52549 12385580 ~ 12386302 (+) True AMCG00008808
AMCG00008803 mRNA upstream 79486 12358727 ~ 12359365 (+) True AMCG00008803
AMCG00008805 mRNA downstream 23515 12463038 ~ 12465622 (+) True AMCG00008805
AMCG00008812 mRNA downstream 29293 12468816 ~ 12469543 (+) True AMCG00008812
AMCG00008811 mRNA downstream 64733 12504256 ~ 12505029 (+) True AMCG00008811
AMCG00008810 mRNA downstream 100075 12539598 ~ 12548554 (+) False AMCG00008810
AMCG00008819 mRNA downstream 129505 12569028 ~ 12569687 (+) True AMCG00008819
TU64384 other upstream 973363 11460363 ~ 11465488 (+) True G51445
TU64201 other upstream 1398177 10984890 ~ 11040674 (+) False G51297
TU64057 other upstream 1731758 10705478 ~ 10707093 (+) False AMCG00008749
TU63913 other upstream 2507770 9929478 ~ 9931081 (+) False AMCG00008727
TU64730 other downstream 275971 12715494 ~ 12716786 (+) True G51734
TU64761 other downstream 403192 12842715 ~ 12846233 (+) True G51756
TU64826 other downstream 485715 12925238 ~ 12926794 (+) True G51812
TU64845 other downstream 541281 12980804 ~ 12992492 (+) True AMCG00008837
TU64968 other downstream 782797 13222320 ~ 13224946 (+) True G51928

Expression Profile