RNA id: TU64684


Basic Information

Item Value
RNA id TU64684
length 2218
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G51707
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 12547400 ~ 12549617 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGgaagcacagaaataaaataaaacaaaaacccgTGTAGAGTAGTAGCTTAATTTGATCAACGTTTCCTACATAAGAAATTGAATCGCCCCAAAAGTTACAAAAGAGACTTTTAAAAAATCCAGTATgaacatataatatattttacataaatacaaatagttttttaaagGACATTGTAGAAGGAAAGAGGAGTTGGCGAAGCACTCTGAGTGCTTAATAAACGAGGGAGCAATTGAAACAAGCAACAAAACgaaataataaaactaagaaTGATAAAATCACCCGTAATTGGTTCCATAAATTACTTGAAATATTATCAACTATATCTGCGgaggaaatacaaatatgcataaGAAACCCTGTTGCATTTTCCTAattcaacattgttttttaaattaatatgttgttttaCCCTGATCGTGTTTATGGCTTAGGTAGCTCACAATAAATGATGTCCAATAAATAGTCCACATGCATTTCGATACAGATCATAAATAGAGAGGTATTATGCCTTCTGTCTTCAAGAGCTAGCACAATAATACTGATCTGACAGAGGCCAGGAAGATGGGAGCTGGAGGGATGCAGGTTCTTCTTCTTAaggttatcattattattcaagTATAAAACAGGTCACATCCAAGGCCATTGCCGAGCTTCAGCAATATTTCTCAGGCTGTGGGCTCCTGGGTCTGTTTGGTCCAGAGTCTTTGATTTTTGTCTTTGACACCAGTAATGTCCTTTAGGTTCTCCTCTTAGTTTGAGGATTGtcagtttttcatttgtatgaATTGTTTGTTCTTGCTTTCAGGAATCTCAGACGTCCCTGTGCGGGAtgaggtgagagggagggagggagtccTTCCATCAAGAAAACAGGCAGGCGATCGGCAAGCCTTCcggttagtgtgtgtgtagagagggGGAACGCATTGCCTGTTTGAGAAGGAGGATTTGATAGGAGTTGCCTGGTGTCCTTCTCTAGTTGAAGCTGAGGGAGTTGAGGATTGGGTGCGGCAGGGCTGAGGGACGTGGGTTGGATTTTGGGGTATGATAATCATGATCAGCTGACCGATGCTTCCAGGTCAGGCAGTTGTGGGAAGGGGTCTTCAAAGTGGGCAGTGTTGGGTCCGCCTGTGCTTTGAGTCCTAAGTCTGTGCAGACTCTGACATCCTGCAACAGAGACAGAGGTCTGAGGTGGCTGTGGCTTCACCTgagtcaaaatcaaaacaaaataaagggcCCGGAGAGAAGATGGATGAGCAGGCTTGTTCAGTGTGGCTGTGACCCAGATGTAGGCCCAGACCCGGGCCAGCCAGGTGTGCGTCCCTCACAGGTGAGTGAGTGTGGGGGGTACCTGAGCGGAGCCCTGAGGCGTGCAGTGCGAGCCCAGGTTGCTGTAGGGCAGGTGGGGGTCACAGGGGCCCAGCGAGTGCTTGGGGGGGCTGGGGGCCACGCAGCTGTAGTCCATgctggcagaggaggaggaggaggaggaggaggtagaggaggaagaggaggcagaggaTGAGGAGAGGTGCTGGAGGTTGAAGAGTGGGATTGGGTGGGAAGGGGGGGGTTCTCCAAAGCTGGCCCCCACGTATCCAGGGCTGGGGTAGCTGTTGTCAACCTGGTCGTAATCCTGTGGCAGGGGGGCGGGGTCGCCGTACCTCTTCTGAGGCGGCAGCTGTAGCGGGGGGGGGCAGTCATAGGGCGAGGCGGAATAAGCAGCCAATCCGTAGACCATGGGGCCGGGGGTTTTGGCGTAGGGATGGGAGAGGGGGGTCTCGTAGCCCAGCTCCCCCGAGTATGGTGCTCCTAGAGGTGGACTGCGGCTGGGAGAGCCCCCTCCAAGCGGGGAGCCCGGCCCAGCCCGGCCCTTGTGGTCCTTCTTGTACTTCATGCGGCGGTTCTGGAACCAGATCTTGATCTGGCGCTCAGACAGCTGCAGCAGGGCGGCCATCTCCAGCCGCCGCGGCCGGCACAGGTAGCGGTTGAAGTGGAACTCCTTCTCCAGCTCCACCAGCTGGGCGTTGGTGTAAGCCGTGCGGGCGCGCTTTGAAGCCCCGCCCACAGCTCCGCCTCCAGGGGGACTGCACTCCCCACTGCTGCCTGACTCTCCTGGTCgaaagatacagagagagaggaaggaaggcCATGAGACAATGGACACGAGGGACAAACACGTAGATGTGGACACAGGGGGaagcaaaataat

Function

GO:

id name namespace
GO:0021591 ventricular system development biological_process
GO:0021592 fourth ventricle development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64683 lncRNA downstream 7056 12539607 ~ 12540344 (-) True G51706
TU64677 lncRNA downstream 43721 12503462 ~ 12503679 (-) True G51700
TU64668 lncRNA downstream 71201 12454919 ~ 12476199 (-) True G51693
TU64648 lncRNA downstream 107877 12438751 ~ 12439523 (-) True G51674
TU64607 lncRNA downstream 204058 12343140 ~ 12343342 (-) True G51634
TU64692 lncRNA upstream 51705 12601322 ~ 12605140 (-) False AMCG00008815
TU64716 lncRNA upstream 107609 12657226 ~ 12660117 (-) True G51724
TU64717 lncRNA upstream 108867 12658484 ~ 12660117 (-) False G51724
TU64823 lncRNA upstream 357704 12907321 ~ 12908333 (-) True G51809
TU64825 lncRNA upstream 370928 12920545 ~ 12920791 (-) True G51811
AMCG00008802 mRNA downstream 288069 12248300 ~ 12259331 (-) True AMCG00008802
AMCG00008801 mRNA downstream 307341 12237425 ~ 12240059 (-) True AMCG00008801
AMCG00008796 mRNA downstream 385878 12150161 ~ 12161522 (-) True AMCG00008796
AMCG00008797 mRNA downstream 401060 12107882 ~ 12146340 (-) True AMCG00008797
AMCG00008794 mRNA downstream 481284 12035166 ~ 12066116 (-) True AMCG00008794
AMCG00008815 mRNA upstream 51674 12601291 ~ 12605260 (-) True AMCG00008815
AMCG00008817 mRNA upstream 92370 12641987 ~ 12651818 (-) True AMCG00008817
AMCG00008818 mRNA upstream 103996 12653613 ~ 12653945 (-) True AMCG00008818
AMCG00008816 mRNA upstream 116218 12665835 ~ 12668432 (-) True AMCG00008816
AMCG00008822 mRNA upstream 167500 12717117 ~ 12721189 (-) True AMCG00008822
TU64350 other downstream 1221041 11320810 ~ 11326359 (-) False AMCG00008777
TU64340 other downstream 1251650 11235642 ~ 11295750 (-) False AMCG00008777
TU64128 other downstream 1748246 10797632 ~ 10799154 (-) True G51250
TU64105 other downstream 1834915 10680278 ~ 10712485 (-) False G51241
TU64811 other upstream 341194 12890811 ~ 12891597 (-) True G51797
TU64813 other upstream 345718 12895335 ~ 12897134 (-) True G51799
TU64897 other upstream 451209 13000826 ~ 13001888 (-) True G51867
TU64926 other upstream 540920 13090537 ~ 13097934 (-) True AMCG00008845
TU65001 other upstream 708089 13257706 ~ 13261822 (-) True AMCG00008853

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1791277 True 1008 lncRNA 0.49 1 NC_048582.1 57067935 ~ 57068942 (+)