RNA id: TU64716


Basic Information

Item Value
RNA id TU64716
length 1584
lncRNA type inter_gene
GC content 0.47
exon number 5
gene id G51724
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 12657226 ~ 12660117 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACTCATCTACACAAGAACTACAACTTgcacaactttaaaaaaaagaaaaatgaaagatggTTTATTTCGACTTGATTGGatgcagttacatttaaaaaacaccataTGGGTGCGtgtcccccccccaaaaaacaaactaaaaaaaaaatctacataaaacCTCATTGGAATGCTTTACACTTTTCACAGAAACATAGCAACTACAAAATATCCTGCTTAACAGCATATGACAAACatagaaaacatgtttgaagccccacatgattttttttttgtttctcctctaTGTCTttgtacattgatttttttttttttttctcttcatgtaGCAGCTGTAACCTGCCACAACTGTGCTTGGCTGAGCAGATCTAGGGTGTAAACCTGCAGCTTCCCTGTCActtctctcgctctcctctCCTAAGTACTGAGTCCTGTTGAACAATACGGAACAACATTGTTAAACTGTGCACTGTCTTTTCAGGAGGTCAATAGAATTTAAAGAGCTAATTAACACACTCTGGGAGGAACCCAGAAGCAAGCCTTCATTGCAGGGCCCAGCACGCCACAGGGACTACCATTAGAGATCTGCATTCAGCGAGAGATACAAGGTGTTGGGGTGGTGGTGGTAAAGAGGCAATAACGCATTGCATTCAATTAAGTTCATTAGCAGAGACCCACTTCTGGGTTAAACTGTGCAGCTGCGGTCAAACACTGGAGAACAATCCTGCACACCATCTTCAAAGAAAAGGAGGGAGATAAAGTGTCATGAAGGTTTGCTACTGGAGCCTCTTCTCAGACTTACATGTTAAACAATATCTTGGAGCTTTACAGAGGTACGAGGTTTGCTGTAAagcacccccccctccctttaaCCTAGCCTACAGGGAGAAGGCTTGTCTGGAGAGTTAAGACTGGCTCGCATGTTGGCCATGTAGAGAAACCACTATTAGACACTTTTGTAGATAAATAGTTAAGGTGCGTGTGTGGGGGATAATCAGTCCTTACCTCTTCATGGTTTAGAACCTCCTGCCCCCAGCACTGTTCCCATAGCCCCCACTGCTGGAGCCACCCCCATATCCACTACCGTATGGGCCTCCACTGTTCCTGCCGCCACCGCCGCCCCCAAAGTTGCTCCCCTTCATCGGGCCATAGCTGGAGGAGGACTGGCTGTTGTAGTTGCCAAAGTCATTGTAGTTACTGCCACCGAAGTTGCCTCCAAAGtttcctccacctcctccaccgTTGTTGTAGCTATCGTAGCCTCCTCCATTCCCTCCGTATCCTCCTCCCTGGTTGCCATAACCCTGTCCTCCACCGTAACCACGGTTTCCACCGTAGCCAGGGCCCCCGCCATAGCCACCTGAAGGAGTGAGAGACTGAGTCTGGTACTCTGATGAAGCATTGTAACCAAGATCCCTCGCATCTCCACCAAACCCATTGTAGCCACCATCTCCTCCATAACCACCACGGCCTCCAAACCCACCCCTCATGTTCATGCCTGCACTGGCCATCTCCTGCTTTGAGAGGGCCTTCCTCACTTCACAATTGTGCCCATTGACAGTGTGGTACTTCTGGACTgtaggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64692 lncRNA downstream 52086 12601322 ~ 12605140 (-) False AMCG00008815
TU64684 lncRNA downstream 107609 12547400 ~ 12549617 (-) True G51707
TU64683 lncRNA downstream 116882 12539607 ~ 12540344 (-) True G51706
TU64677 lncRNA downstream 153547 12503462 ~ 12503679 (-) True G51700
TU64668 lncRNA downstream 181027 12454919 ~ 12476199 (-) True G51693
TU64823 lncRNA upstream 247204 12907321 ~ 12908333 (-) True G51809
TU64825 lncRNA upstream 260428 12920545 ~ 12920791 (-) True G51811
TU64876 lncRNA upstream 263087 12923204 ~ 12924656 (-) True G51851
TU64906 lncRNA upstream 361907 13022024 ~ 13023104 (-) True G51875
TU64988 lncRNA upstream 475615 13135732 ~ 13136309 (-) False AMCG00008844
AMCG00008818 mRNA downstream 3281 12653613 ~ 12653945 (-) True AMCG00008818
AMCG00008817 mRNA downstream 5408 12641987 ~ 12651818 (-) True AMCG00008817
AMCG00008815 mRNA downstream 51966 12601291 ~ 12605260 (-) True AMCG00008815
AMCG00008802 mRNA downstream 397895 12248300 ~ 12259331 (-) True AMCG00008802
AMCG00008801 mRNA downstream 417167 12237425 ~ 12240059 (-) True AMCG00008801
AMCG00008816 mRNA upstream 5718 12665835 ~ 12668432 (-) True AMCG00008816
AMCG00008822 mRNA upstream 57000 12717117 ~ 12721189 (-) True AMCG00008822
AMCG00008823 mRNA upstream 65407 12725524 ~ 12735479 (-) True AMCG00008823
AMCG00008821 mRNA upstream 79056 12739173 ~ 12745962 (-) True AMCG00008821
AMCG00008827 mRNA upstream 186890 12847007 ~ 12856225 (-) True AMCG00008827
TU64350 other downstream 1330867 11320810 ~ 11326359 (-) False AMCG00008777
TU64340 other downstream 1361476 11235642 ~ 11295750 (-) False AMCG00008777
TU64128 other downstream 1858072 10797632 ~ 10799154 (-) True G51250
TU64105 other downstream 1944741 10680278 ~ 10712485 (-) False G51241
TU64811 other upstream 230694 12890811 ~ 12891597 (-) True G51797
TU64813 other upstream 235218 12895335 ~ 12897134 (-) True G51799
TU64897 other upstream 340709 13000826 ~ 13001888 (-) True G51867
TU64926 other upstream 430420 13090537 ~ 13097934 (-) True AMCG00008845
TU65001 other upstream 597589 13257706 ~ 13261822 (-) True AMCG00008853

Expression Profile