RNA id: TU64732


Basic Information

Item Value
RNA id TU64732
length 4318
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G51736
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 12739197 ~ 12745766 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctttttatttaaatgccgTCTTACAAAAGTtagctgaatttaaaatattaaaaaaacgtaGATCTTTTGATATCAATGTTACTGTTTAAGATTTGTACAATGGTCAGAAGGAATACcagatgacacacacacacgtattgAGCCgaacaacaaaaatggaaacCCAAATTAGCTACCCAAATTAAAACCCTATATAAGAGAAAACATTATTGAAAGTGAACACAGGATCACAGCATAGTTCCTTGAAGAGGGATTACAATAAATTCCATGTTTTGCAGTAGGGCTGTGAACTTTGAGATTTCAAGGTCAgtcaataataaagaaataaaaaaaagtacttaTTCTCCATGGTGACGTCACAGACCTCTTTATAAGACACAATTTTATACTTCAAGTTCAAACTGCAGCTGCATTGGAGATTGACTCAACCCGTTCAGTCACTTTCCCAGTCAAGCCTTGGGGGTGAGGTTTGGTTTAAAGTTAGTCTGGAGTCCATTGAAAAAATTGAGTCAAGGAAAGCTCAAGTGGGAGTGTTAAGGTTATGACTTTTAGTCAGGTCAGGGACAGGTTTATGGATGAAGTTGGGGTTTGTAGGACAAACAAATCATTCACCTAATTCCTGCACTGAAACTGTAGTGCTTCTTCACGTTCGATTTGTTTTCTCCTCGCACTCCCAAAATAAAAGCTGCATGACTGCATTCACTAAACGCATAAGAAAACCTGTATAGACTCAACTTCTTGCGTCAGTGAACAGGTTTTTAactatttaataaacaaaaacaaaaaatggagtCCTTGTGCACTGACTTCTTGTGTGTTAATGATTGTCGAATGATGGTCTGAATTCAGGGTCAGGGAGATGCGCTGGAGGACTGCCCTCAGGCCTTGAGTTACTGTTAGTGTAAGAAGTAAAGTCAGGATTAGGCGATACAGTTAGGGTGAGGATTGTGGTTGCACTTCGGGTTAGGGGTCTGAGTTTGTTTTGCGTGTGTATGTGGGTGGAATTGTAGACTCCAGCAATGCAGGCAGGGAGGCGTGGCTTGGGTCAGGGGGGGTCCAGCAGGAAGTCATAAGTCTCGGGGTGCAGGGGGGAGTCGTCCTGGGATAGCAGGGCGTGCAGTCGCCCCGCCGTGGCCCCCCAGCGCTCGCGGGTCCTCCAGGTGCGCAGCATGGCAAACACTGCCTCACGCGGGCAGTGCGGGTTCTCCTCCTCGCACTGCTCCAGCCGCACGCTGCCCAGCCCCAGCAGCTGCCGCCCCACCTGCTTCCACTCGTGGCCCAGGGCCCCCGCCAGACGCATGAGCTGCTTCTCTGTCACCAGCGCCGACCCTGGAGAACACAGGCAGAGGGGACAGgaTCCCACTCTCTcccagtcctctctctctctcaggactaCTGGAGCAAGTGCCACCCTCCTCGGGACTACACATATCTGCGTGAGCCGCCCACCTGCCCGCTGTGCCTCCTGCACTGCCCCCTCCCTGAGGAACCCCAGCTGGGGGTAGGTCTCCTGTATCTCTGgcttctgcagcagctccagaaGGGTGGTGGTGGCGCGGCACCCTTTATCCAGGACACAGTCCAGGAGGTCCCGGGCTTTCTCTGAAGGGTTTCCTGCCGCTTTGATCCGGCGGTATTCCTGGCAGGACAGTAGGTCTAGTGAGTCAGCGTGCTGCAGGATGAAGTCTGGGTCAGAGCCAAGAGCCTCGATGATCTTTGGCTTGCACCTCCGCAACGTAACAGTGGAATCCATGGCTGTAGATGGTGTCCTGAGGAAGAGAGGTGAGAAATGTGAACAGGGTTAAATTGAGACAAGGATCAAACTTCTCACTCATTCTACTCAGCACCAGGCAGAGTGAAGGGAGAGGGGTGAAGTTCAGCACATGAGGACCTGGGTTGTTATGTTAAGGGTGTGCTAAGGGTCttgatatctttttttttttttctcacacatCACCACATTTAGTTTTATCTTCGAAATTAATTTCTCGCTTCCTCAACTGTCACTTCTAGCCTTcctcccacaaacacacacacaatgttctGCTCTGTTGCAACAGAGAGCCAGAACCAGTGAAGGTTAGAATGCCTGAGCCACTTCCCCGTGTTACATCAAGTACTGCGTAGCTGGCCACTGTGGAAATGCGTATAACTTCACCCCTTTTCCTGGACAACTCCTATATTGTCAGTTCAATTTCCTGTTTTATCAGGTGTCTCCAACctaaaaatatttatgtaaaaatgcaaataaaggcATAAGTGTTTGTGTAGGTAATTTCATCACTTTCCTAGCAACCAGCCTACACATCCCTCTCCCCTTTTCCAAGAATTGTTGTTGAAGTTGAATAATGCActtctgttgttattattcaatATTGTTACCAATGTTTTGTCCTGATTTGGCAGTGTGTGACACCCCTTGTGTGCCAAAAGTGAAAACAGCGTGActcagggtgcctgtctgtACACGATAAACAGAGCAGACAGCGTCTCAAGGACATTACCAGCTGTGGCCTCTTTGTCAGCATTGTATCATTTCACGTataatttcctgttttaaaaGGTCAAATAATATCTGTTCAGTAAACTGCCAACAGACACATGCATCCTCTGAAGTGAGAGAGGACATTATTCGGCATCCCCTCTGCACCCTTTGCTTTTGATCCGGTTCCTTTTCCTCGCTCGCCCCTGAGGGCAGCCCTGTTGCTTTTTTGCTCTTTATTCAACTATGCTTCCTCAATGCTCTCGTATTGATGCATTGTTAGCGCCTCTGTAGTTTTAATGAAACTTCTCTTCCGCCCCCCTTAGCACGTATCTCGGATCAGTCTGTATCGCATATCTGCACTCGTCAGCATGCATGCTTATTGTAATGTGTACTAACTGTACTACTGCACTTAAAACTGTAAGTAAAATGTTTCCAATTGGATTGATGGTTCctgatttaaaaagagaaagtaCATTTCAAccgtttttattatttttaacttttttagtTTTACCGAACGACATCTGTCAGTCACGTGAGGTCACATGACATACACAGTATACGCAATCATTCCTCGTCACACTGCGTACTGTACTACTTACTAGTGAGAAAATCCGTATGTAGCATGCAGTATGTAGTAGGGTAGTAGAACACAGCCTCGGTCACTGTTTTCTCCACTCCTCGCTGACAAAATGTTGGCCAGGTGTGTAATTTAAACTGCAGGCTGCGGCCTGTAAAGGCAGCTGCACACAAGAGACTGTGCATGTGCGAGTGGAAAGCATGGTCCCTGCAGCAGGATCCCTGTCGCTCTGTCCTTCACCACcgctttcttttttgtttcttatgtatgtatttttgttttgcttttgtatatatacatatatagccaaggaggtttaaaaacaaagaatacagGGTACAAGGCAGATTTTACTTGCCGCATCTGGTGCAATCCGAGGCGGATTTCGGGAGTGGGAGGAGGGAGCAGGCTGGACTGAGGCGATTGCATCTGCGCAGGCGTCTTCGTTGGAGACGCGTTGATggattactgtactgtactgcagccCTATTgactgaaacaacaacaatactacagccagtaataataataatatcagtttCAATACCTAAAGCTCTTAGATCGAAAACTCGATACTGCCCACATTACCAGAAGCCTATTTACGTTGTGTGATTGCTCTTTTATCTAGTCCATCTAGTGCAGGGGTGTCCAGAGTTTTCTCGACGGGACGTATGTGAAAGTTTGAGTATTTTCAGGCGCCGCATACAATTAGGTGACcacatttctgaaatgaaaaacgCGGACATTTGACGGTCCTTATATcaacaaaataaccaaaatatgttattaattcagaaaataaaaagggaacatttacattttggcataTTTATACCATGGTAaatgtagtactgtagtaaaaTATGGTGCAGGTACACATAGGCCTTCCCAATGGCACTAGTAATaacagttttaaacatttttgtatttcaatgatTGCATACATTTTGCAGCACTCTGGGTCACTGGGTGTTGATTCTTCTGCACTCTGGCTGGCTAGATAAGAGCTGAAAGGAAGAACATGAACATATGAAAAACGTACACTAACCACAAAACTACACTAACCACATTAGAACTTATTTAACAACATAACATAAGAAATATGCTGTGTTAAGGTACAACAACGACGATTTCCAGTGTTCATTACGTGTTATTTTGTCGTTGTTTCAGCAGTTGAGCCCGGTGGGCATCGAAGCACTTAGGTTTCAGAGCGTCCATGGATGAAGACACCAAGCGAgccaaacatttttgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64731 lncRNA upstream 16217 12721082 ~ 12722980 (+) True G51735
TU64697 lncRNA upstream 91233 12646523 ~ 12647964 (+) True G51718
TU64687 lncRNA upstream 179498 12559471 ~ 12559699 (+) True G51710
TU64650 lncRNA upstream 189579 12548060 ~ 12549618 (+) True AMCG00008810
TU64660 lncRNA upstream 235021 12503916 ~ 12504176 (+) True G51685
TU64810 lncRNA downstream 150583 12896349 ~ 12897107 (+) True G51796
TU64828 lncRNA downstream 181852 12927618 ~ 12927845 (+) True G51814
TU64844 lncRNA downstream 233098 12978864 ~ 12980775 (+) True G51828
TU64940 lncRNA downstream 394797 13140563 ~ 13187139 (+) True G51904
TU64982 lncRNA downstream 508048 13253814 ~ 13257640 (+) True G51939
AMCG00008820 mRNA upstream 45696 12688197 ~ 12693501 (+) True AMCG00008820
AMCG00008813 mRNA upstream 76746 12660779 ~ 12662451 (+) True AMCG00008813
AMCG00008814 mRNA upstream 79465 12654567 ~ 12659732 (+) True AMCG00008814
AMCG00008819 mRNA upstream 169510 12569028 ~ 12569687 (+) True AMCG00008819
AMCG00008810 mRNA upstream 190643 12539598 ~ 12548554 (+) False AMCG00008810
AMCG00008825 mRNA downstream 57503 12803269 ~ 12810428 (+) True AMCG00008825
AMCG00008824 mRNA downstream 75032 12820798 ~ 12840200 (+) True AMCG00008824
AMCG00008828 mRNA downstream 145236 12891002 ~ 12895612 (+) True AMCG00008828
AMCG00008830 mRNA downstream 154129 12899895 ~ 12907881 (+) True AMCG00008830
AMCG00008829 mRNA downstream 163919 12909685 ~ 12912736 (+) True AMCG00008829
TU64730 other upstream 22411 12715494 ~ 12716786 (+) True G51734
TU64384 other upstream 1273709 11460363 ~ 11465488 (+) True G51445
TU64201 other upstream 1698523 10984890 ~ 11040674 (+) False G51297
TU64057 other upstream 2032104 10705478 ~ 10707093 (+) False AMCG00008749
TU63914 other upstream 2808116 9929478 ~ 9931081 (+) False AMCG00008727
TU64761 other downstream 96949 12842715 ~ 12846233 (+) True G51756
TU64826 other downstream 179472 12925238 ~ 12926794 (+) True G51812
TU64845 other downstream 235038 12980804 ~ 12992492 (+) True AMCG00008837
TU64968 other downstream 476554 13222320 ~ 13224946 (+) True G51928
TU64983 other downstream 508412 13254178 ~ 13257640 (+) False G51939

Expression Profile