RNA id: TU64813


Basic Information

Item Value
RNA id TU64813
length 1800
RNA type TUCP
GC content 0.43
exon number 1
gene id G51799
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 12895335 ~ 12897134 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGATGATTGAACGCATTCAAGAACGtgtaaacttaatttattaaaatgctgcaCGGCATCACGtggcatttgaaaagcaaaacttAACATGTTCATTACTTGTAATTTCAATAACAAAAGGACACTCGTACAGTATAAATAGTAACACAATCATCCGAAGTGGTGAGATGGACGTACAGCAGTACAAACAGCACAACAGGCCCGAAACGACAAACTGCTCAAAGTGTTTTCCACTAAACAGTGTCATCTCTCCTGATGTACAAACACACTGTAAAGTTCTTAAATAGACAGTctcaaaagaataaaacaataataagtgGAAAAATccattatacatattaaaaacaatacatagccgttaattaaataatatgaacaGACTTTAATATTAAAGCTTTTACgtgtatgaaaaatacatttaacaattgatttgtttatttattctcaaaAAGTACAGCAGTCTCcagaaaacagttaaacagggaAATTATGTGATGAcatgttgctttttaaaattaattcttTGGTTGTTTATAGGATGGTGTTGGAAATATGGGAAAAAATGGAAGACAGCTGTTGAGTTTCTAGATTTCTATAGATTGTATACATTGCATATATGCgtatgtgtaagtgtgtgagacagaaaataacatatcactccagaataaattaaatataaacatttggtATAATCATATGTAATGTTGTCAGTGTCTCCAAGGAAATGGAGGGAGAGGCGGAGGGTTCGAACTGCACGTGTGATCAATGCTTTATCGGGACCAAACCCAAACTCTGCCCTGCCAACCAATCGCCGAGCACAAAACCTGTAccctattgtgtttttattaataaggAGTTGAATGTGgtcttggggtgggggggtgggttttGATTCACGGCAAAATTTTGACTTCAGCAATTTTCTACTCAActgttagttttttcttcagtcTTTCATTACAATCATTCGGCTTATCCGCTTGAACTCTGTGTGGCTCCCCAGGTCATTTTGGCAGTGGGTCTTTTCAACTATACTTGTGTGGTGATTACAGATAGTGTTTGGTACACAATGAACACCGCCACATGAACACATGAACACAATGGAAGATGGAAAAGACCACTACTAATTCATTTAGGCAGGTAGTGGCCTtccctgaccccccccccctccccgagAACAActccctaaaataaataaataaataaataaactcctCTTGGTAAAAACATGCTCATCGTGAGAACAGAAATTTCTGCAGCGAGACTGGTATAAGATTACCGCTAGAGGGCAGTGTGGCACTACAGTCTTATAGTGAACTCTCAACGACGTTCGCGCTGCTTTACGGTGTCAACTAGGGGAACTATGGTCACCCCCGGGAAATGTGTGCCTTGCATTGCAAACATAATGGAAGAGTATAAAGTAAGCATGGTTGAGGGATATGCTTGTGTCCAGGGtgctggtgttgtgtgtgtgttttgtgttgagaGCAGATGAtcttttgtggggggggggggggggggttcccaGTCTGTGGCCTGCATCTCTCTGGGATGGGTTGGGGGGTGGGATGGGGACGTGCAGTGTCCAGCACACACTGtggtcttcctcctcctcctcctcctctctccttctccatcCTCCCTTTCTTTCCACCTCtcgccttctctctctcctccacgGGGTGCCAAGCTCCCTCACTCCCTTTCGCAACGCAGGGTGGCCGGGTCCCGGTCAGGGGAGGGCAGCAGCTGGCCGAGCTCGTCCACACACCAGCACTCACCCCTCTGGGTGCCCTTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64716 lncRNA downstream 235218 12657226 ~ 12660117 (-) True G51724
TU64717 lncRNA downstream 235218 12658484 ~ 12660117 (-) False G51724
TU64692 lncRNA downstream 290195 12601322 ~ 12605140 (-) False AMCG00008815
TU64684 lncRNA downstream 345718 12547400 ~ 12549617 (-) True G51707
TU64683 lncRNA downstream 354991 12539607 ~ 12540344 (-) True G51706
TU64823 lncRNA upstream 10187 12907321 ~ 12908333 (-) True G51809
TU64825 lncRNA upstream 23411 12920545 ~ 12920791 (-) True G51811
TU64876 lncRNA upstream 26070 12923204 ~ 12924656 (-) True G51851
TU64906 lncRNA upstream 124890 13022024 ~ 13023104 (-) True G51875
TU64988 lncRNA upstream 238598 13135732 ~ 13136309 (-) False AMCG00008844
AMCG00008826 mRNA downstream 10667 12863623 ~ 12884668 (-) True AMCG00008826
AMCG00008827 mRNA downstream 39110 12847007 ~ 12856225 (-) True AMCG00008827
AMCG00008821 mRNA downstream 149373 12739173 ~ 12745962 (-) True AMCG00008821
AMCG00008823 mRNA downstream 159856 12725524 ~ 12735479 (-) True AMCG00008823
AMCG00008822 mRNA downstream 174146 12717117 ~ 12721189 (-) True AMCG00008822
AMCG00008832 mRNA upstream 16402 12913536 ~ 12917796 (-) True AMCG00008832
AMCG00008833 mRNA upstream 29459 12926593 ~ 12942236 (-) True AMCG00008833
AMCG00008834 mRNA upstream 69214 12966348 ~ 12969537 (-) True AMCG00008834
AMCG00008839 mRNA upstream 133436 13030570 ~ 13046587 (-) True AMCG00008839
AMCG00008845 mRNA upstream 195873 13093007 ~ 13097390 (-) False AMCG00008845
TU64811 other downstream 3738 12890811 ~ 12891597 (-) True G51797
TU64350 other downstream 1568976 11320810 ~ 11326359 (-) False AMCG00008777
TU64340 other downstream 1599585 11235642 ~ 11295750 (-) False AMCG00008777
TU64128 other downstream 2096181 10797632 ~ 10799154 (-) True G51250
TU64105 other downstream 2182850 10680278 ~ 10712485 (-) False G51241
TU64897 other upstream 103692 13000826 ~ 13001888 (-) True G51867
TU64926 other upstream 193403 13090537 ~ 13097934 (-) True AMCG00008845
TU65001 other upstream 360572 13257706 ~ 13261822 (-) True AMCG00008853
TU65036 other upstream 410288 13307422 ~ 13309425 (-) True G51974
TU65044 other upstream 423140 13320274 ~ 13325227 (-) False AMCG00008860

Expression Profile