RNA id: TU64826


Basic Information

Item Value
RNA id TU64826
length 1557
RNA type TUCP
GC content 0.57
exon number 1
gene id G51812
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 12925238 ~ 12926794 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCCAGTGTGTTTGAACCTGTTTCCCGGACCAGACAGACAGGTAGGTAGGCACGTCACGTCTTGACCTTTCACCGTGTCCCTGTCGTTAGGGGTGCCCGGAGCACACCCGCCTATCCGTACTGTTGGAGGGGATGGTGGCGGGGGGCTGGACGGGCACTGGCAGTGCTGGCGTCAGTGCCCGTGTCCTGGTGGCAGCGTGCTCTTACTCCCTGGTAAAATTGCTGGCATCTGCTGTTGCATTTTCGGGAGTTGGATGCTTCCcatgttgctgttgctgctgctccaGAGAAGAGTCGTCCATCCCCCCTACCCCAAGAAACTCCCGTCTCCTTCAGCCCTGTTTTAATCATGtctaatatttaatcatatttaatatttttgactTCATTTGTATAGTTCTGAACCAAGTTAATCAGACTAGCGGTGTAGGAATTGGTCCCTGTCACATTCTCCATTAAGGAGGTGCTTCTAACAGCTGAGCCCCCACCCCGCACTGGCTTCTCCTGCTTGTCCAGAGAAGGCTCCCCTGGGTCAGTCTGCAGGTCTGTGGTTCACTGGGCACTGGACTGCAGCATCGCCATTATAATGTCATTGTCGTATTTGTGAGCCCCCTCCTGGGTCAGCAGTCTCCTCCAGTCTCTCCAGTGTGTGGGGGTGGTGACTGGTGAGCCGgagcctctcctctcctctcttccgtGACCATCAGCGATCGTTTGTCACAGTCCGTGCGGGAAGAGGGGAGGCggcaaatgaaaaaagaaaaattccaCAATCTCCAGGCAGGatataaaagaaataaaagataataaataaacgAAAGACAAAAGCAGGACAGGGAGCTCAGACCCCCTCAGCACTCTTCGTCCTGTGACGCCCTGGGCACAGGTCCACATGTCCCCCAAGACACTGACTGAGCCTGGGTACTGGCATTGAGTGTGCTGACCGCACACCGCCCATAGAGCCCCCTTGTTCCTGTCGAAGCCCATGCAAGCAGCACCCCCTCTCCAGTCCTACCTCCCCCCAGCCCACCCagcacagtgtttatttatactGGGCTACACCTGTCAGAGCACCAGTCacctgtcagtcagtcagtcagtcagtgtatcagtcaatcagtcaatcagtcagtcagtcaatcagtcccAAATGCTGTATCCCAGTAGCCCCTGTATCACGgatatcctctctctctttctctccctccttcctttgctccttctctctctccctctggagACAGGGTGGGTGGTTggtgtccagcagggggcaaaGAGTTCTTGTTGTGTCTGGTCTGGGGAGGGTCGTGTCGGGGTCTGGGCTTCGTTGTGGTGGGCGTGGTCACGGGAGGAGGTTAGGACACCCCCCTGCGGGAGTTGGCGCGGCTCAGGCTGGCTGTGCTGGACTTGCGGGAGAGCCCAGGTGTGGACGCGCCGGGGGGGGCCTCGTTGGGGCAGCCGTGCTGGAGCAAGATGTCGGCGCACTCCTGGCTGCCCGCCCGACGCGCCAGCGTCAGCGCTGTCTGACCCTGGGCATCCCGCACCCTCACGTCACTG

Function

GO: NA

KEGG:

id description
ko04660 T cell receptor signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64810 lncRNA upstream 28131 12896349 ~ 12897107 (+) True G51796
TU64732 lncRNA upstream 179472 12739197 ~ 12745766 (+) True G51736
TU64731 lncRNA upstream 202258 12721082 ~ 12722980 (+) True G51735
TU64697 lncRNA upstream 277274 12646523 ~ 12647964 (+) True G51718
TU64687 lncRNA upstream 365539 12559471 ~ 12559699 (+) True G51710
TU64828 lncRNA downstream 824 12927618 ~ 12927845 (+) True G51814
TU64844 lncRNA downstream 52070 12978864 ~ 12980775 (+) True G51828
TU64940 lncRNA downstream 213769 13140563 ~ 13187139 (+) True G51904
TU64982 lncRNA downstream 327020 13253814 ~ 13257640 (+) True G51939
TU65028 lncRNA downstream 382822 13309616 ~ 13310773 (+) True G51968
AMCG00008829 mRNA upstream 12502 12909685 ~ 12912736 (+) True AMCG00008829
AMCG00008830 mRNA upstream 17357 12899895 ~ 12907881 (+) True AMCG00008830
AMCG00008828 mRNA upstream 29626 12891002 ~ 12895612 (+) True AMCG00008828
AMCG00008824 mRNA upstream 85038 12820798 ~ 12840200 (+) True AMCG00008824
AMCG00008825 mRNA upstream 114810 12803269 ~ 12810428 (+) True AMCG00008825
AMCG00008831 mRNA downstream 31963 12958757 ~ 12962983 (+) True AMCG00008831
AMCG00008837 mRNA downstream 54150 12980944 ~ 12992725 (+) False AMCG00008837
AMCG00008836 mRNA downstream 70304 12997098 ~ 13002084 (+) True AMCG00008836
AMCG00008838 mRNA downstream 78808 13005602 ~ 13014133 (+) True AMCG00008838
AMCG00008835 mRNA downstream 136701 13063495 ~ 13065081 (+) True AMCG00008835
TU64761 other upstream 79005 12842715 ~ 12846233 (+) True G51756
TU64730 other upstream 208452 12715494 ~ 12716786 (+) True G51734
TU64384 other upstream 1459750 11460363 ~ 11465488 (+) True G51445
TU64201 other upstream 1884564 10984890 ~ 11040674 (+) False G51297
TU64057 other upstream 2218145 10705478 ~ 10707093 (+) False AMCG00008749
TU64845 other downstream 54010 12980804 ~ 12992492 (+) True AMCG00008837
TU64968 other downstream 295526 13222320 ~ 13224946 (+) True G51928
TU64983 other downstream 327384 13254178 ~ 13257640 (+) False G51939
TU65027 other downstream 379938 13306732 ~ 13309430 (+) False AMCG00008856
TU65505 other downstream 1555127 14481921 ~ 14483255 (+) True G52349

Expression Profile