RNA id: TU64876


Basic Information

Item Value
RNA id TU64876
length 1453
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G51851
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 12923204 ~ 12924656 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCAATTTGAAGAAACTATTTGAAGTCTTATTTAAGCAGAGAAAAATAGAGGGAGAAATAAgagtattgtaaaaaaaaagaaaaaaaagacaaatatatatagagataaaTACTATGATATAATGACAATggtgattataattattattattgcaatgtaTGTACAAGATTGTAACTGTACCTAATGGAGTGTGTGCGAGTTCCCCAGCAGCACTCACAACGCGGTGGGTCATGAACTCGGGATCCAgccgttttatttttctgttttgggtttttgttctgtttttctagtgccaactttttttttaaagacatttgatATTTTCTAATGAAGACAGATGTTGTAGTATTTCTTGTTGTTGCCgccgttgttgttgttgttattgttgttgttgttgccgctgttgttgttgttgtagcagTAGTAGGACTAGCAGCTgttgatgttttctttgtttttttcccccgcTGTTGGTTTTCAAGGGGTGtcctgctgggctgggctgggctgggctgcagtgctgtgctgtcctgcaGGACACAGTGCTGGTCAGATTCTCCCCTCCTGGACCTCCAGAGTCACTGAGCAGCaccacacaaacaacacaacacaacacaacacaccaaTACAGGATAAATACAACACCACAGAgcagcacacaacacagcaataCAGActaaatacagcacaacaccacacagcaatacatatttaatacagtatagCACAACACCACACTGCAATAAAAATTGAATACAGAATAGCAcaacacaaatttaaaacagtacagtacacaatacattataacatAGTGCAGTACAGCAGAGTACAATCTgtacaacacagacacaaacacagtaatACAGACTTAATACAGAATTGCATaggtgagtacagtacagttaagGTCATATAGTTCAGTGCAGCGCCATTCGGTACAGTGCGGTGTAATCAAATATTCATACAGTTCAGGCACCGTACAGTCAAGTGCACTTTGACCCAGTTTGGTAATAGAAAGTGCTGTAGGAGAGATAGTGTAGTGCAATAAAACccagtacagtacaacacaatgCCATACGGCAGAAAACGACTGCTTTTGGTGTTTTGATTTCCAAACTGAAACAGGTGCATCCCATAATATTCCAGGACAGCACAGTGGGAGTGGGACAGAGGGGTCTGGCAGACAGCTGACCAGAAAAGTGTAGGGGTAAGTGCGGCACAGGTCAAAGCTGGTCTGCCTCTGAACAACAGACTGGGTCCGAGACAGCCTGTCAGTCCAGTCAATGTGATCGTGTGATTTTCCTATTCtggttttatgttgttgttgttgttgttgttgttgttgttgttgttgttgttgttgtttgattttttttggaTTAGAATTTTTGAATTTTGAACAgaattatttctgttgtttcaatcaatgttttctttttttgcaagagttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64825 lncRNA downstream 2413 12920545 ~ 12920791 (-) True G51811
TU64823 lncRNA downstream 14871 12907321 ~ 12908333 (-) True G51809
TU64716 lncRNA downstream 263087 12657226 ~ 12660117 (-) True G51724
TU64717 lncRNA downstream 263087 12658484 ~ 12660117 (-) False G51724
TU64692 lncRNA downstream 318064 12601322 ~ 12605140 (-) False AMCG00008815
TU64906 lncRNA upstream 97368 13022024 ~ 13023104 (-) True G51875
TU64988 lncRNA upstream 211076 13135732 ~ 13136309 (-) False AMCG00008844
TU64990 lncRNA upstream 211076 13135732 ~ 13184356 (-) False AMCG00008844
TU64997 lncRNA upstream 244774 13169430 ~ 13213278 (-) True G51946
TU64989 lncRNA upstream 257259 13181915 ~ 13184356 (-) True AMCG00008844
AMCG00008832 mRNA downstream 5408 12913536 ~ 12917796 (-) True AMCG00008832
AMCG00008826 mRNA downstream 38536 12863623 ~ 12884668 (-) True AMCG00008826
AMCG00008827 mRNA downstream 66979 12847007 ~ 12856225 (-) True AMCG00008827
AMCG00008821 mRNA downstream 177242 12739173 ~ 12745962 (-) True AMCG00008821
AMCG00008823 mRNA downstream 187725 12725524 ~ 12735479 (-) True AMCG00008823
AMCG00008833 mRNA upstream 1937 12926593 ~ 12942236 (-) True AMCG00008833
AMCG00008834 mRNA upstream 41692 12966348 ~ 12969537 (-) True AMCG00008834
AMCG00008839 mRNA upstream 105914 13030570 ~ 13046587 (-) True AMCG00008839
AMCG00008845 mRNA upstream 168351 13093007 ~ 13097390 (-) False AMCG00008845
AMCG00008844 mRNA upstream 211095 13135751 ~ 13138152 (-) False AMCG00008844
TU64813 other downstream 26070 12895335 ~ 12897134 (-) True G51799
TU64811 other downstream 31607 12890811 ~ 12891597 (-) True G51797
TU64350 other downstream 1596845 11320810 ~ 11326359 (-) False AMCG00008777
TU64340 other downstream 1627454 11235642 ~ 11295750 (-) False AMCG00008777
TU64128 other downstream 2124050 10797632 ~ 10799154 (-) True G51250
TU64897 other upstream 76170 13000826 ~ 13001888 (-) True G51867
TU64926 other upstream 165881 13090537 ~ 13097934 (-) True AMCG00008845
TU65001 other upstream 333050 13257706 ~ 13261822 (-) True AMCG00008853
TU65036 other upstream 382766 13307422 ~ 13309425 (-) True G51974
TU65044 other upstream 395618 13320274 ~ 13325227 (-) False AMCG00008860

Expression Profile