RNA id: TU64940


Basic Information

Item Value
RNA id TU64940
length 1738
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G51904
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13140563 ~ 13187139 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttttttttcttttctttttttttcTGCGTTGCAGAGAGACAGTGTTTATtggcagctgcagtacaggtgGGGAGTTCAGAATACAGAGCGATTGTACACATTTATCaggaaaaattacaaaataaaatatcaacatTGCTTGCAGACCCTTAAACCTGACTTCAGGAAACACAAACTGGGCACGGTCAGCACCGCTCTGTCCACTCTGTCCAGCTATTGCACAAAATCCTACTGGACTCGAACACCATGACATTAACACACTGAGACGCTGTCTTCCCTGCTGCTACAGAGCACAACCGACTCCACTGTCAGTGTGGCTGTAGTGGCCTTCCCCATTAATACTGGgttcaatgtttttaaacattgtagAGAGTGCCTTTTTATGGTGAGAAAGCACATTACAAAGCATCAAGCAAGaacacagaataacaataataataggaatTATAATGGaagtaaatgaaatgcatatttaaaaaatccttcaatctttccaaataaaatatattccttcCCACTGATTAAGAAGCTAAGTGTGTTTTATCCTGCTGTGAGGCCATGCCACACAGACCGGGCACTGTGGCCATCGcgttttgtgttgcatttcttAACAGAGATAGTTGATAATGTTTTCTGCACAGCTGGAGCCCCTGATGCCCTTTGCCCCAGCCCTTTACGGGCACATAcagactgcatgtgtgtgtgtgtgtacatcgTGACAGCGAGGCACTTTTGGAGCTACAGTATACAGTTGTGTCGCCGCCGTGTTGTTGTGGACAGGTATTGAATTCTGGCCCTGAACTGACGTGATCACAATGCAAAAGTAATTAGTTTGGGCAGAAGCCATAtctacacatacatgtatacgtACTAATAgttatgtgtgtgcgtgtttttaGGAGTGACAAAAATTAGACCGAGATTCAGGATTCCCCTTCTTCATTCCCACATTCCTATATTCCCAGCATCCCTTTCTCTCCTGTACTCCTGAACTCCAGCTTTGATCAGGCCACACGTGACACGTCTGCAtatacagacatgcacacaaacacacaaacactctcctGTTTACCTCCGctgaaaagaacagaaaaatactgacaataacaataggaatcataaaatacatattaaaaaaacaatgatagACCAGCAACAATGTAATAGTTCAAATAACTTTGGTTTTCGGTGTACAGCACTCTGGGTGGTGTCTTTAAGGCGGCGATGGGGACCCATTCTCCATACCAGCTCTGGGATTGTTATATTCCCAGCTCCCTACAtacctccctctctttctctctcttcccctctacCTCTCTCCTTTCCTATCCCTCTCCATCCatatctgtgtctgtctgtctatctgtgtatgtgtgtgtgtgtgtgtgtctgtttgtatgtttgtatgtatgtatgtgtgcgtcTCTGAGAGACTGATTTCATTGGATTTTGACTTTTCTGCAGCCATAGTCAAGGATGGGTTTACAAGGGAAGGATCTGCCCTGCATCTACCTGGCTGgtgatcaaataaaaaatatctctCCCCCCTCTTTTCCCCCTCAAAATCTCACAGTACAGCAgataaattaaaagattaattgtttaaattgtaaaaacacTTGGTGTCACAGAGTGGGAGTGAGGGAGCGTGGAGGGGAGGGTTGAAGGCATCGCTGGCTGAGCCTGGGTCATAGTGACTATCAGTCATTTAGGTCGTCTCCTCTTTCAGATCGTAcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64844 lncRNA upstream 159788 12978864 ~ 12980775 (+) True G51828
TU64828 lncRNA upstream 212718 12927618 ~ 12927845 (+) True G51814
TU64810 lncRNA upstream 243456 12896349 ~ 12897107 (+) True G51796
TU64732 lncRNA upstream 394797 12739197 ~ 12745766 (+) True G51736
TU64731 lncRNA upstream 417583 12721082 ~ 12722980 (+) True G51735
TU64982 lncRNA downstream 66675 13253814 ~ 13257640 (+) True G51939
TU65028 lncRNA downstream 122477 13309616 ~ 13310773 (+) True G51968
TU65029 lncRNA downstream 124190 13311329 ~ 13312458 (+) True G51969
TU65030 lncRNA downstream 126451 13313590 ~ 13315052 (+) True G51970
TU65130 lncRNA downstream 289611 13476750 ~ 13476978 (+) True G52044
AMCG00008842 mRNA upstream 7888 13123231 ~ 13132675 (+) True AMCG00008842
AMCG00008841 mRNA upstream 23519 13105526 ~ 13117044 (+) True AMCG00008841
AMCG00008840 mRNA upstream 42648 13074080 ~ 13097915 (+) True AMCG00008840
AMCG00008835 mRNA upstream 75482 13063495 ~ 13065081 (+) True AMCG00008835
AMCG00008838 mRNA upstream 126430 13005602 ~ 13014133 (+) True AMCG00008838
AMCG00008847 mRNA downstream 94135 13281274 ~ 13288925 (+) True AMCG00008847
AMCG00008858 mRNA downstream 112167 13299306 ~ 13302628 (+) True AMCG00008858
AMCG00008856 mRNA downstream 119356 13306495 ~ 13309244 (+) True AMCG00008856
AMCG00008857 mRNA downstream 146626 13333765 ~ 13347362 (+) True AMCG00008857
AMCG00008855 mRNA downstream 168266 13355405 ~ 13366105 (+) True AMCG00008855
TU64845 other upstream 148071 12980804 ~ 12992492 (+) True AMCG00008837
TU64826 other upstream 213769 12925238 ~ 12926794 (+) True G51812
TU64761 other upstream 294330 12842715 ~ 12846233 (+) True G51756
TU64730 other upstream 423777 12715494 ~ 12716786 (+) True G51734
TU64384 other upstream 1675075 11460363 ~ 11465488 (+) True G51445
TU64968 other downstream 35181 13222320 ~ 13224946 (+) True G51928
TU64983 other downstream 67039 13254178 ~ 13257640 (+) False G51939
TU65027 other downstream 119593 13306732 ~ 13309430 (+) False AMCG00008856
TU65505 other downstream 1294782 14481921 ~ 14483255 (+) True G52349
TU65523 other downstream 1340679 14527818 ~ 14540958 (+) False AMCG00008910

Expression Profile