RNA id: TU64968


Basic Information

Item Value
RNA id TU64968
length 475
RNA type TUCP
GC content 0.63
exon number 3
gene id G51928
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13222320 ~ 13224946 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTTTGATCAGGTCGCCCTCCTTCAGGGTGTAGTCTGGGTCGCTCTTCAGGGGGGAGAAGTGGCACACGCAGTTATTGACCGAGACGCTGGTGGGGAAGGCGATCCCTttcttcatctccttctccttcttgaAGATCTTGCCAGTTTCCTGCATGATGAGGGAGTCCCCCTTTTCACACAGAGCCAGCACTGACACGCCGGGCTGGGCCGCCTCCACCACCTTGCGCACAGCCTGGTTGGCGATGTCGCCCCCCATTTTGTACTTGGTGACCACCAGGTCCTCGGCGATGGTCTGCTCTTGCTGCTCGTCGTCTCCCGACATCTTTATCTCGGCGGCTCTCTGGCACTTCTGTCCCCGGGGTGTCGGCGGCGagctcagtcagtcagtcaggctcGATCCCGTGGCTCCGGCCCGGCCTCCACGACCCGCCCCCCGCGCACATACGCGCCGCACGTCACAGGCCAGGGCCCCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64940 lncRNA upstream 35181 13140563 ~ 13187139 (+) True G51904
TU64844 lncRNA upstream 241545 12978864 ~ 12980775 (+) True G51828
TU64828 lncRNA upstream 294475 12927618 ~ 12927845 (+) True G51814
TU64810 lncRNA upstream 325213 12896349 ~ 12897107 (+) True G51796
TU64732 lncRNA upstream 476554 12739197 ~ 12745766 (+) True G51736
TU64982 lncRNA downstream 28868 13253814 ~ 13257640 (+) True G51939
TU65028 lncRNA downstream 84670 13309616 ~ 13310773 (+) True G51968
TU65029 lncRNA downstream 86383 13311329 ~ 13312458 (+) True G51969
TU65030 lncRNA downstream 88644 13313590 ~ 13315052 (+) True G51970
TU65130 lncRNA downstream 251804 13476750 ~ 13476978 (+) True G52044
AMCG00008842 mRNA upstream 89645 13123231 ~ 13132675 (+) True AMCG00008842
AMCG00008841 mRNA upstream 105276 13105526 ~ 13117044 (+) True AMCG00008841
AMCG00008840 mRNA upstream 124405 13074080 ~ 13097915 (+) True AMCG00008840
AMCG00008835 mRNA upstream 157239 13063495 ~ 13065081 (+) True AMCG00008835
AMCG00008838 mRNA upstream 208187 13005602 ~ 13014133 (+) True AMCG00008838
AMCG00008847 mRNA downstream 56328 13281274 ~ 13288925 (+) True AMCG00008847
AMCG00008858 mRNA downstream 74360 13299306 ~ 13302628 (+) True AMCG00008858
AMCG00008856 mRNA downstream 81549 13306495 ~ 13309244 (+) True AMCG00008856
AMCG00008857 mRNA downstream 108819 13333765 ~ 13347362 (+) True AMCG00008857
AMCG00008855 mRNA downstream 130459 13355405 ~ 13366105 (+) True AMCG00008855
TU64845 other upstream 229828 12980804 ~ 12992492 (+) True AMCG00008837
TU64826 other upstream 295526 12925238 ~ 12926794 (+) True G51812
TU64761 other upstream 376087 12842715 ~ 12846233 (+) True G51756
TU64730 other upstream 505534 12715494 ~ 12716786 (+) True G51734
TU64384 other upstream 1756832 11460363 ~ 11465488 (+) True G51445
TU64983 other downstream 29232 13254178 ~ 13257640 (+) False G51939
TU65027 other downstream 81786 13306732 ~ 13309430 (+) False AMCG00008856
TU65505 other downstream 1256975 14481921 ~ 14483255 (+) True G52349
TU65523 other downstream 1302872 14527818 ~ 14540958 (+) False AMCG00008910
TU65601 other downstream 1567223 14792169 ~ 14794972 (+) False AMCG00008920

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00062347 True 2476 mRNA 0.45 13 NC_007117.7 7533601 ~ 7551140 (+)