RNA id: TU64982


Basic Information

Item Value
RNA id TU64982
length 3827
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G51939
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13253814 ~ 13257640 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACAGTTCATACgtaaaacaagtttattttgaaCAAGCCGGGTTTTACAGTCACAGCAGAAACTGCGACtccagtttttatatatattctttattgtaTCATCATTTTTTAACAGACACTGTCTAGCCATCAAAAATTGACCTGAAACACTAAACCTACTACTAAATAATCAAGCACAGCTTTGGGAACACAAgagccaataaataaataaataaataaataaataaataaataaaacgccaTGGATTGAAATcagacaaagacaaacaaatgtaaacaaaatcataaaccATGATACAGTACAGTTGTCCACAACGAGCCAAGGAATGAAGAAACCaatccctccccccccaccctgatCGCTTCCACCTGCAAACCATcttgaaaagagaaagaagcTGAATTGATGAATACAGTAACGCTAAATCAACAGAACTGCTATAAggccacacaaaataaacatcgCTTCCACATACTAGTTTTACTGTAAAAGTTGTGTGCGGGATTTTACTCACGCGAGTCCAGGCGGAAAGACCGTGTTTTCTTTTAGCTGACGATTTTGTATTTACAAGTAATTtggaacccccccccaccccccgagtGGTGGTTACCGAGGTGATTCCCTAGTAACATGAAGCAGGGTGTGGCTTCTGGTTGTGCCACTCAGGATCGAGAGACACAAACTGGGCCGAGACGCATTCTGGTCTtagttttcaattttaaaaccaaactgaccaactaaagaaagaaataacacTTCAACGCTCACCACTGGGGTGAAGGACGTCTCATCTTTCTCCAATTTGGTCTTGAAAAGGAATCAAATACCAGGGCATTAGAACCCATATAATCAATATGTAGATAATCCAAAACAAGGGACTTTGATCAGTTTTTATCATGTAGCCTAAGACCCACAACCTTTTACACCcactcctccctcccttcctcctcctACAATCCGATTGGCTCCCTGCAGCGTGGGCACGTGTGCTTTTGTGGGCCCCTACACTGACAGctgtggcccagtcagagcagAGGGGACGGCAGAAAGACTCAAACACATGACTGATCCCATCCCTCTCGTTAGCTACCTCTCATATGCAGCTTCAGGGAATGCATGAAggaacaaacaaattaataaataattaaaagcatacaTACACTACCAAATCCTGCCCATTGCctgtccaaaaacaaaataaataaataaaatagataaaaaacaataatgaaaggcagtgcagtgtgtcagtgtgcagctCAGTGGGTTAATGTGTCCATCTCTGAGCAGGCAGGTCCAGCACTGTCCAGCACTGTCACAAGGTGCGTTTCTGCAGTGGCTGTGAGGCACTGGACTGCCCTCAGTGGCACTTCTATCCAGTCACAGAGCAGGTACAGCACAGCCCATGGGAACTCTGTCTCTGGCTGGCTGGCTTTCAATCAGTTGGCCTACAAGGCAAGAACAAGTACAATGCAGATAATATCCAGAGCTCTCTCTACCTGTCCATCTATCTAGACACAGTACAGCACTATAGGCAATACAGGCAAaactatctatctgtctatctatcgcTCAATCAATTTTTTCAGAGAGCAAGTACAGCAGGCAATGGATgctccatctatctatctatctatctatctatatatgtacTTACCTACCTATCTATCAGTCTATTCACATGGCAGCTACAGCCGGTCCACCCCTGCCTTTACCCATAGTGCAGACATGGCTCATGCCATCACAGCGGTCACCCCTGACCTGCACTCCCATGCAGGTACAGCAAGGCGGCACTGCAGAGccagcagcacagagcagacaTAACAGCTCATCTACCTACGTCATCTAGCTagctacctacctacctacctacctaacCTAGCTCCCGGCCTATCTATCTACCCAGAGAAGAATTCTAGCACTACAGCACAGGCAATGTCGTCTACCTAACCGTCCACACAGCAGGTGCAGAGCATGCAATGGGAACTCGGTTTACAGCACAGCTACAATCGACATAGCAAAAGCTACCATCTACCATCCTACCTACCTACTGAACTACCAACCTACCTACCTACTCACCCACCTATCTGCAGGTGCAGCTCATGCAAAGCTCAAGACAACACAGAGTCGGTTTACAGTTTGCAATGGCAGCTACACTTAATACAGACAGCCTTTTCATGCGCTGAGAAGATCTGTGCACagatcagacacacacacacacacacacacaaacagtgtaAGCTCCACCTATCCAAAGGACATACACatatagcacagtacagtgcaggGGACAGCTCTGCCTGTCTGCACACTCACTGTTGCTCTTGCATACAAACCTCATACAACCCCCTCCTTGATTACTGCCCTGAATGTATGCCCTACATTGACAGGGGGTGAGAGGGCCTCTTGTCTctaaaaagacagacagacagacagaagaggCCGGACTATTATCTGTTAATACCTTATCTAGTGAGATTCAGAGGGTCTCCTGCTCAGAGGTTTCTCACAACTGTCCATCTACTGACATGCACAAAGCACCTACTGTTCTCACACAGTACcaagcactcacacacacacaaaataaataaaacaaacaaaatctgatAATGATCAATTACATTGCTGAAGAAAACATGAGAGCATCTGTAACCCAGCTGCACAGCCCAGCGGTGCTAACCCAGCGCTGCAGAGTCTCCCCATCAGGCAACAGTGCGGAGACGCCCACAGTCAGGCCAAGACAGGAATGGCTACGAAATGAACGTTGCGAGACCctcacacccacccacccctccGCCACCAGTACAAAAGGTAGAAATCTGAAAACTGCAAGGAGCCAATCAGACACAAGAACTGAAAAGATTTCACCACGTGGGAACCAGTGATATGAGCACAGCAAACCTGCATGTGTGATAACTCCACAGGTCTAGGTATAGCTTTATTATTGGTTCGCTCGGACTGTGATATTCGATAGTAAAAAAACTAACTAAACGTGTCCTTGTATATTCCATCACAAGAGAGAAGTTCTGGAGCTCACAGGGATTTCAGTGCAGAGGgagaaaatacttaaaaacgCACGATTTTTCGGTCAGTTCAGGACTTGAGACTGGATATGATGGGTCTCATGATAATAAACAAGGAAACTGCGACTCAAGTAAAGATACCCattgaatttagtttttatggtttgtgtgtttgttggtttgattaattatttaggGACTAGCCTTTAAAGATGTTTGGGGAACACTTGTTTGATGAATGGACATGAATCCACCTCCCCTACGTTTCTCATACTTCACCTCGAGTTCACAGAGGTTTGGGCGTGACAAGGATTTCTCTGCAGTGCCAGAATCACACCTGATGTCGGTTGGCCTCAAACGTTGCGGGTCTTTAAAACGCGAGTTACAAAGCCGAGCGACACATGCAGACCTCTGATCAACCCTGAACTTCCAATTTCTAACcagtaaaattaaatgcatctgtgatttttctttttgatgatctgtatttttaaaaatccttttCTAATCGCAACCCCAACTGGAgatttttcaagtttttctgTGAACTTCAGGTGAAAGTGCAGGAGGAGCCTAGCTGACTATCCTTATGCTGGGGACCTGGGGGGGGAGGGTACAAGTCCAGCCAGTTAcagaggaggacgaggaggagatggagaaggaggaggagaaacaaagcaaaccaaaacaaactaaccaaaaactaaaaaagaggTTTAAGAAAGAGGGTGCAAGAGGCGAGGGGTTTGCTGCAACAACCCGACGCCCCTCTTCCCGAAAAAACACAGTTCCCTGAAGAACCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64940 lncRNA upstream 66675 13140563 ~ 13187139 (+) True G51904
TU64844 lncRNA upstream 273039 12978864 ~ 12980775 (+) True G51828
TU64828 lncRNA upstream 325969 12927618 ~ 12927845 (+) True G51814
TU64810 lncRNA upstream 356707 12896349 ~ 12897107 (+) True G51796
TU64732 lncRNA upstream 508048 12739197 ~ 12745766 (+) True G51736
TU65028 lncRNA downstream 51976 13309616 ~ 13310773 (+) True G51968
TU65029 lncRNA downstream 53689 13311329 ~ 13312458 (+) True G51969
TU65030 lncRNA downstream 55950 13313590 ~ 13315052 (+) True G51970
TU65130 lncRNA downstream 219110 13476750 ~ 13476978 (+) True G52044
TU65199 lncRNA downstream 429199 13686839 ~ 13687780 (+) True G52100
AMCG00008842 mRNA upstream 121139 13123231 ~ 13132675 (+) True AMCG00008842
AMCG00008841 mRNA upstream 136770 13105526 ~ 13117044 (+) True AMCG00008841
AMCG00008840 mRNA upstream 155899 13074080 ~ 13097915 (+) True AMCG00008840
AMCG00008835 mRNA upstream 188733 13063495 ~ 13065081 (+) True AMCG00008835
AMCG00008838 mRNA upstream 239681 13005602 ~ 13014133 (+) True AMCG00008838
AMCG00008847 mRNA downstream 23634 13281274 ~ 13288925 (+) True AMCG00008847
AMCG00008858 mRNA downstream 41666 13299306 ~ 13302628 (+) True AMCG00008858
AMCG00008856 mRNA downstream 48855 13306495 ~ 13309244 (+) True AMCG00008856
AMCG00008857 mRNA downstream 76125 13333765 ~ 13347362 (+) True AMCG00008857
AMCG00008855 mRNA downstream 97765 13355405 ~ 13366105 (+) True AMCG00008855
TU64968 other upstream 28868 13222320 ~ 13224946 (+) True G51928
TU64845 other upstream 261322 12980804 ~ 12992492 (+) True AMCG00008837
TU64826 other upstream 327020 12925238 ~ 12926794 (+) True G51812
TU64761 other upstream 407581 12842715 ~ 12846233 (+) True G51756
TU64730 other upstream 537028 12715494 ~ 12716786 (+) True G51734
TU65027 other downstream 49092 13306732 ~ 13309430 (+) False AMCG00008856
TU65505 other downstream 1224281 14481921 ~ 14483255 (+) True G52349
TU65523 other downstream 1270178 14527818 ~ 14540958 (+) False AMCG00008910
TU65601 other downstream 1534529 14792169 ~ 14794972 (+) False AMCG00008920
TU65600 other downstream 1534704 14792344 ~ 14794972 (+) False AMCG00008920

Expression Profile