RNA id: TU65023


Basic Information

Item Value
RNA id TU65023
length 536
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G51965
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13299338 ~ 13300283 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGAAAACACGCTTACAACAAAAGTCGCAGCATGTCTGTCCTGTACAGCGGTGCAGAATACGGACAGGCTGACCAGTggacagaggacagagagacGGACACAGGCACACTTACCACTGTCTCCACTACTAACTCCTCCAGTACTTCGTCCCCCACTGTATTGTCCGGGGTAACAGTGTAAAAAGTTGCAAAAAGGACTAAGATCAATCCAGCCCGGAACTCCATGGTTTCAAAAACGACAGGTTTCCAACTAATAATCTAtagttttatatgtatatgaatgtatagttttatatttaaaaaaaaagtctaaaaaaaaactctgcacAGTCAGAGACTGCACGCACGAGTGTTTGAGCTGATGTGTTATTCCCGGGTTACTGTGATAACGGGCCAgtgagaaggaaaagaaaaaaagggaaagaatcTGTCCCCAACacctggactggactggattcCCCGCCTCCACATTCCGCCAGCATCTCACAAGCCCCTCCCGGTCTGGCCACGCTGGGAGCCGGGCTGCAGTTCACCGTC

Function

GO: NA

KEGG:

id description
ko04950 Maturity onset diabetes of the young

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65000 lncRNA downstream 41719 13253853 ~ 13257619 (-) True G51948
TU64999 lncRNA downstream 83343 13214272 ~ 13215995 (-) True G51947
TU64997 lncRNA downstream 86060 13169430 ~ 13213278 (-) True G51946
TU65002 lncRNA downstream 88139 13209551 ~ 13211199 (-) True G51950
TU64990 lncRNA downstream 114982 13135732 ~ 13184356 (-) False AMCG00008844
TU65035 lncRNA upstream 7139 13307422 ~ 13309425 (-) False G51974
TU65103 lncRNA upstream 73100 13373383 ~ 13455852 (-) True G52019
TU65126 lncRNA upstream 137805 13438088 ~ 13439626 (-) True G52041
TU65235 lncRNA upstream 471277 13771560 ~ 13776929 (-) True G52131
TU65263 lncRNA upstream 522830 13823113 ~ 13830315 (-) True G52157
AMCG00008849 mRNA downstream 25357 13268534 ~ 13273981 (-) True AMCG00008849
AMCG00008853 mRNA downstream 40280 13257698 ~ 13259058 (-) False AMCG00008853
AMCG00008851 mRNA downstream 52768 13227621 ~ 13246570 (-) True AMCG00008851
AMCG00008852 mRNA downstream 74544 13219924 ~ 13224794 (-) True AMCG00008852
AMCG00008848 mRNA downstream 90791 13206889 ~ 13208547 (-) True AMCG00008848
AMCG00008861 mRNA upstream 2429 13302712 ~ 13305069 (-) True AMCG00008861
AMCG00008860 mRNA upstream 16584 13316867 ~ 13322530 (-) True AMCG00008860
AMCG00008859 mRNA upstream 28686 13328969 ~ 13331002 (-) True AMCG00008859
AMCG00008864 mRNA upstream 139639 13439922 ~ 13456129 (-) True AMCG00008864
AMCG00008865 mRNA upstream 159278 13459561 ~ 13473216 (-) True AMCG00008865
TU65001 other downstream 37516 13257706 ~ 13261822 (-) True AMCG00008853
TU64926 other downstream 201404 13090537 ~ 13097934 (-) True AMCG00008845
TU64897 other downstream 297450 13000826 ~ 13001888 (-) True G51867
TU64813 other downstream 402204 12895335 ~ 12897134 (-) True G51799
TU64811 other downstream 407741 12890811 ~ 12891597 (-) True G51797
TU65036 other upstream 7139 13307422 ~ 13309425 (-) True G51974
TU65044 other upstream 19991 13320274 ~ 13325227 (-) False AMCG00008860
TU65198 other upstream 385052 13685335 ~ 13686737 (-) True G52099
TU65308 other upstream 638168 13938451 ~ 13949091 (-) False G52187
TU65310 other upstream 643715 13943998 ~ 13983893 (-) True G52187

Expression Profile