RNA id: TU65035


Basic Information

Item Value
RNA id TU65035
length 1136
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G51974
representative False

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13307422 ~ 13309425 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTGAATCAGCTCAGGCAGGGAAACGGGGGTTTTAGACAGAGCCCAGATATcagcaggagaggaggaaaCACAGTTCACAGCTCACCAGGCAACCCACACAtcaatatacacacaaaaattataataagacAGTAACTCCCAATGCAGTCTGTTCAAATGGACATTTTATTGTTGAATTTTGATGTAGAAATGTACAGGTTCATCCCGCATTACATGGGCTTCGGTGGGGCTCTGGGTGCGCCGCCCtgtataagaaaaaataaagtaaataattgaaatcCCCAATAACCCAAAAGGCAACCTCCACTCATCCACACTGTGTACAACCACTACAACCTCTAACTGCTGCCCTGCATGCGCTCTGTGTAGTTGGCGTGTAGCCCACGTTTATGTTCACATGCGCCCTGCATCtctgtgtgcaagtgtgagAATGCGTGTCTGTCCATCCGTCCGTCAGTAGATACTCACACTGGGTCTGAAGCGGGGAGGTGGGGTGCGGTCTTTCCTGGCCTCGCGGGAGCGGTTCCTCACCACCTTGCTGTGGATGGCACAGCTGACGCAGTAATGCAGCTTCACGTACAGCTTGGGCAGAACGTAAGTCAAAGACGCTGGCCTCGGAGATGTCCCTGACGGCCGCTGCCTCCACAATGTTCCTGATGACGAACTTCTTAATGGCCTTGTCCTTGGGCACACAGCGGGCACAGTTGGTGCAGCGGATAGGCTGGACATGGCCACGACCCTTCTTGGCACGGCCGTTATTCCTTCTCTTCTTCGTCTGCAGAATGAAAGTATTGagaacattacaaatacaatttactcCTGGAGGCATCAGGCTAAACCCCTTTCATCACTGGGCTGTGTAAATCAAACTCTGCCgttcattaaaatatatcgATTTAATGTAAAATTCGTAACTTGTGTGGGTTTTGAGATTAAATAAGTATACAAAGGGCATTGAATCATACCATTCCCACTTTAAAGCAAGTTCGTTTGAGTTTACCTGAAACTCTCCAGATATTTACATAAAAGGACACAACACTCGGCTAGAATTATGTACTAATAGTAGCGGGCGATGTAAATCTGTAACGTACAGTAACGGATGTATGGATTTGATATAGATCTATAAAAACTGATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65023 lncRNA downstream 7139 13299338 ~ 13300283 (-) True G51965
TU65000 lncRNA downstream 49803 13253853 ~ 13257619 (-) True G51948
TU64999 lncRNA downstream 91427 13214272 ~ 13215995 (-) True G51947
TU64997 lncRNA downstream 94144 13169430 ~ 13213278 (-) True G51946
TU65103 lncRNA upstream 63958 13373383 ~ 13455852 (-) True G52019
TU65126 lncRNA upstream 128663 13438088 ~ 13439626 (-) True G52041
TU65235 lncRNA upstream 462135 13771560 ~ 13776929 (-) True G52131
TU65263 lncRNA upstream 513688 13823113 ~ 13830315 (-) True G52157
TU65338 lncRNA upstream 696302 14005727 ~ 14006439 (-) True G52214
AMCG00008861 mRNA downstream 2353 13302712 ~ 13305069 (-) True AMCG00008861
AMCG00008849 mRNA downstream 33441 13268534 ~ 13273981 (-) True AMCG00008849
AMCG00008853 mRNA downstream 48364 13257698 ~ 13259058 (-) False AMCG00008853
AMCG00008851 mRNA downstream 60852 13227621 ~ 13246570 (-) True AMCG00008851
AMCG00008852 mRNA downstream 82628 13219924 ~ 13224794 (-) True AMCG00008852
AMCG00008860 mRNA upstream 7442 13316867 ~ 13322530 (-) True AMCG00008860
AMCG00008859 mRNA upstream 19544 13328969 ~ 13331002 (-) True AMCG00008859
AMCG00008864 mRNA upstream 130497 13439922 ~ 13456129 (-) True AMCG00008864
AMCG00008865 mRNA upstream 150136 13459561 ~ 13473216 (-) True AMCG00008865
AMCG00008866 mRNA upstream 171553 13480978 ~ 13487619 (-) True AMCG00008866
TU65001 other downstream 45600 13257706 ~ 13261822 (-) True AMCG00008853
TU64926 other downstream 209488 13090537 ~ 13097934 (-) True AMCG00008845
TU64897 other downstream 305534 13000826 ~ 13001888 (-) True G51867
TU64813 other downstream 410288 12895335 ~ 12897134 (-) True G51799
TU64811 other downstream 415825 12890811 ~ 12891597 (-) True G51797
TU65044 other upstream 10849 13320274 ~ 13325227 (-) False AMCG00008860
TU65198 other upstream 375910 13685335 ~ 13686737 (-) True G52099
TU65308 other upstream 629026 13938451 ~ 13949091 (-) False G52187
TU65310 other upstream 634573 13943998 ~ 13983893 (-) True G52187
TU65929 other upstream 2175957 15485382 ~ 15505517 (-) False AMCG00008951

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU567011 False 569 lncRNA 0.46 2 CI01000340 14318389 ~ 14319062 (+)