RNA id: TU65103


Basic Information

Item Value
RNA id TU65103
length 4455
lncRNA type sense_over
GC content 0.46
exon number 2
gene id G52019
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13373383 ~ 13455852 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tggtgtgtgtgtgtNNNNatatatatatatatatatatatataaataaatcttatgtttcaagattacaaaaaaattcACCTGTAGTCTCCACACATTACTGCAAACCCAGGAAGCACAAAGAAAAGCAGACCAATACAAAGGactaactaatttatttatatacaaaaactGTTTACAGCAAGTCTCTGTTCTGAGTGCGACTGCaagagaggtgtgtgtgagtgtatgcctgtgtgtgtgagtcagtgtctgtatgagtgagtgtctgtctgtctgtctgtgtgactgtgagaGTGGCAAGTTTGCCAGGAGAGAGGAGTCAGGGCTGCACTGACAAAACACTAAGCTGGTGCCCTGAAGCAGACAGCAATTCTGAGAAAAACCAACAAACTGCAGcaacaccaccaaaaaaaaaaagagaaacaaaaaaataatcacacacgCTACCCTACAGGGGCTCCCCAGTCAGCGCCCAGAGAGAACGATGCCACACTGGGCGGCAGGGTGAACAGGTCCAGCCCTTTGGGGGGGTACACCTGTGTCCTCAGGACCTCGCTCCAAGATCGCTCCCCAGGTGCTTcatctatttaaaatgacattccTAGCCCTTAGAAAGTTGTTTCAACAGCAAATTTACCCATGATGCATTCCAGACAAAGATCTGGAGACACAGACTGGAGTCCCTACACTCAAGGGTGGGCATGCTCCAGGGTTCGGAGGGGGAGCGGGAGCAAGGAAAGCAGCCAGGGACCCAGGCCTGGGGAGCCCTTTCCCATTGATCGACAGTTGCTCTCCCAACCACCCCCCTGTGACAATACACACTCAGTCGCAGGGAGGGTGACCGCTCCACCTGGCACTTGCTTATATAGAGGTCTTTAAACTCACACACTACTTAGGGCAGCCAAGGGCTCCCAgattggaataataataataataataataataatattattattaataataacaataataatgtcattCAACAATCCCCTTTTACTCAGAACACCATACTGAGCCTAGAGGTGGAGCTGGGCTATTATCACCAGCTGAACTATACTGTCCTATACCGCCACTGCCTGCAGAGTCAAGAGACCTGCACTTCCTGTTTGAATTACAGAGCACAGGATGGTTCAGGACACTCACTCAAACGACCggggggacacacacacccggaaCCTCCTGCTACCAAACCCCTCTGCTGAACCACTGTACACTGGGCTGAGCTACATCACCAGGGGGCACTGTCCATCAAGTCTAAGTGGTTTCATCTGGGAGGTGGGGGTGATAACTTTAGCATGTCAGTTCATGTGTTATGAATATGCAATCTGACAGAGAGTGAGAAAGGAGGATAGGGAGTAAGGCACAGGGCACAGTAAACTGTGGCCAAAACATAAATaccagagaaaaaaataaactgagaatAATAATGGACTTGTCAACATCTTCACATCCAAACCAAAGAAAAGAACCTGTGATTCTGAATTCTGATTAGTGTTCATgatgtttgtattgatttacaaCCATCTATgaagacagaaaagaaagacaaacacagagaaacagagagaagggGATGACAAGGTTTACTTTtcccaaaaatatattaaccgCTTAGTCTGCAACCATAAACCGCCATGACCGAGTACTCGGTTTAGGAGCAGTGTAATTACTTAATATACACATACCCGACCCTAACAGAACAGAGTGATCCAACACTCCACCTCCCCTTGCGTCCGCCACCAGGGAGCCATTCGCTCAGGGAGCCAAACGATTGCccttctttttgtttatttgtaggTCTGTTTCAAAGTAAAGCAGTTTCTAGTAAcgcatcacaatatatattaatattacaaaggAAAACACCCCAGTCTTGCCCATGAAGGAAATCAGTCAGCTGGTCCTGAAACACACTGGGAGACTATATATTGTGAGCCTTTTCTTCACAGGGGGATTGCAGGGGACACTACTCAGAGCTGCACTCTCAACACTGCAGTCAATAGAAGTATAGAATCCCCCCACCTTACAGGGATTCTACCTACTCTCTTTCACCAGTGTGGtagtggtggggggtgggggttgatAGTGAGGCCTATTTGGGGTTTCttcatacattatatttattctgaagTGTAAAAATTCTCTGAAAGCTCCAGAGAGGAGAATTGAGTTTAATGTTTGATGCATGAAAGCTTGACACATCCAGCCTGTTGAAACCCAGAGGAGGGTTTGTTTCAGGTTCTTGATTTGTTGTGGTTTACTTACTGTCCCTGGCCGGCAGCATCCTGCACTGTCTACTTCCCTATAGAATAAACTTATTTTCTGGGCAGATGACAACGGTCTGCTGTATAGTGGAACTGTCTACACCCCCAACACAGGCAACTCGTTCACCATCtctatgtacacacacactagcatgcacacatgcacacaatttCCAGTGCTCACTGGAATAAAACTTCTTCTGTGTAGTTAGATGCAGTTGCCACAGGGTAGGGGTATCAGGAGTTTGGCAAACTATATTCCCAGATTACAACAGTTAACCCTGAGACGACAATCCCCCGAGGTCGAGGTGAATACCCAAACCTGCACTTCCGAGTGCAGAGAATCACCCCCCCCACTTCAGAACGGAGAGGAATGCCGTTAATCTAAGGCACAGGACGGTCGACAAGAAAATGTCTCCCGTTTGGAATTAAGTACAACAACCGATGGAAAGAAAgacaggagaaagaaaaggagctCAGCAGAGGAACAGCGACACTGTTTCTCTAGATCAGCAGAGACTGACAGCCAGGGTGTCAGGACAAGGCACCGGTTTTAAaggctttgtttttgtgagtgtgttggTGTGCccaagtgagtgtgtgtgtgtgtgtttgtttgtgacaATAGCAGAAACCCCACTTTACCCACAAATTCTATTTATCTTCCTGAAGGAGTAAAAATTGAAGTgaagaggagaaagaagagACAGAGATGCCTATACAACTATCAAAAgtataattacttaaaataataataatcatcattatcaacCTCATCCAGCCAGCTTACTACCAAAAAAAGGTTACGGtccactattttttttttttttttttttttataggaaaTTATATAACCATCTAtaattttctataaaaaaaggGACAAATTATTACAGtaacaaaataatggaaaatatactGCCAGTGAGTTCCTTGCTGTATTTTACAGTGTATACACttcctttataaaaaaataagcattgtATCTGCGACTGAGGCTGAGATTTTTCATCCAATCACTTCACAGGTGCAGACAGCCTCAACCGAGCCGTTCCTACTGTGTACAGTGACTGCCCGGGACCATAGCACAGCATTTGACAGCCAGCCCCCGGTATCCCACAGCTGACACCAACAGCCAATGCACAATAACTGGAAAAGCCGCCAATGAAGCCGGATCGGATGGGAGTTCAGGCAGCAGTCAGGTGAGGCCTCCAATTCTTCCCCTTCTCCCACTGCACGCTGTCTTCCATCCATTACAGCAAAACTGTGTCTCCTCGTATTTTCAACAAAGGCTCAAGCCGTCAGGCAAGCTTCAGCCAGGCCTAGTGGATCAGGATAGATAAAGGGGTGCGTGGCGGGTGGGCGGGCTTGTACGGGTGGTAAGAGTGCTTGGATTGGTGGAGTTCAATTGCAGTGAAGGTCCTTAATTGGCTGGGTGCAGGTTGGGATCCGATTGGCAGAGATCAGCAGTGGCTGCTGTAACTGTGTGACTCCGGTCTGACCTGTGGTGGGTTGCgggtggtggaggggggtgTGGAGAGGTCTGGATTAGGACTGGTCTGAATCCTTCCTTTTCCCCACAGAAATCAAGAACACAGGGGCCACTCTGGGTAAATCTGACTTATACTCAATACGTTTAGAACaaatgtaaaggaaataaaatattctgattTTTTAGTCTGAATTTAGAAGAAGCAgaacctgttttgttttggtaacacctcagtgttttgtttgggttttttatGTTATGGTGGTTTGGTTCGTTAACCATCCTTATTCTCTGGATTTCCATCATTCTAAACCTGGGACCTCCAATCTTCAATTCTAAAGTGGATGGGTGGCtgggggcagggagggggtgggtCCAGAACCATGACAGGCTGATTAACGGAGCCCTGCTGTAACACTCCAGAGCCAGGTCTGTGCTGTCCGGGCCTGTGGGCCCCGCATGCTGTGATTGCTCAACTAGTCGTGGCATCTGTGTGCtggtgaaggaggaggaggaggtggtggtggtggtggtggtggtggtggtggtggtgggggttggCCTGGCTGTGCCGCTCTGGCCCCTGCGTCCCAGGTGGCGTCTCTACATCACTCTGCACTTCTTGTCCTCTGCAGGTGCGTTGCCGTCCGCCCTCTCCATCTCCAGGATGATCTTCTTGAATACCTCCACGGCCGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65035 lncRNA downstream 63958 13307422 ~ 13309425 (-) False G51974
TU65023 lncRNA downstream 73100 13299338 ~ 13300283 (-) True G51965
TU65000 lncRNA downstream 115764 13253853 ~ 13257619 (-) True G51948
TU64999 lncRNA downstream 157388 13214272 ~ 13215995 (-) True G51947
TU65002 lncRNA downstream 162184 13209551 ~ 13211199 (-) True G51950
TU65235 lncRNA upstream 315708 13771560 ~ 13776929 (-) True G52131
TU65263 lncRNA upstream 367261 13823113 ~ 13830315 (-) True G52157
TU65338 lncRNA upstream 549875 14005727 ~ 14006439 (-) True G52214
TU65362 lncRNA upstream 671387 14127239 ~ 14127501 (-) True G52233
TU65441 lncRNA upstream 816122 14271974 ~ 14275087 (-) True G52296
AMCG00008859 mRNA downstream 42381 13328969 ~ 13331002 (-) True AMCG00008859
AMCG00008860 mRNA downstream 50853 13316867 ~ 13322530 (-) True AMCG00008860
AMCG00008861 mRNA downstream 68314 13302712 ~ 13305069 (-) True AMCG00008861
AMCG00008849 mRNA downstream 99402 13268534 ~ 13273981 (-) True AMCG00008849
AMCG00008853 mRNA downstream 114325 13257698 ~ 13259058 (-) False AMCG00008853
AMCG00008865 mRNA upstream 3709 13459561 ~ 13473216 (-) True AMCG00008865
AMCG00008866 mRNA upstream 25126 13480978 ~ 13487619 (-) True AMCG00008866
AMCG00008869 mRNA upstream 82141 13537993 ~ 13540286 (-) True AMCG00008869
AMCG00008874 mRNA upstream 124564 13580416 ~ 13584831 (-) True AMCG00008874
AMCG00008873 mRNA upstream 129235 13585087 ~ 13608948 (-) True AMCG00008873
TU65044 other downstream 48156 13320274 ~ 13325227 (-) False AMCG00008860
TU65036 other downstream 63958 13307422 ~ 13309425 (-) True G51974
TU65001 other downstream 111561 13257706 ~ 13261822 (-) True AMCG00008853
TU64926 other downstream 275449 13090537 ~ 13097934 (-) True AMCG00008845
TU64897 other downstream 371495 13000826 ~ 13001888 (-) True G51867
TU65198 other upstream 229483 13685335 ~ 13686737 (-) True G52099
TU65308 other upstream 482599 13938451 ~ 13949091 (-) False G52187
TU65310 other upstream 488146 13943998 ~ 13983893 (-) True G52187
TU65929 other upstream 2029530 15485382 ~ 15505517 (-) False AMCG00008951
TU66056 other upstream 2381137 15836989 ~ 15837801 (-) True G52782

Expression Profile