RNA id: TU65126


Basic Information

Item Value
RNA id TU65126
length 1509
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G52041
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13438088 ~ 13439626 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctaaaataaatacagtttattgCTCATGCTCAAGATAAAAATGACATGTACAGCATGaatagaaaagaaacaaaactgtatataatatatacctGTATGTCTTCAAAAATCAAGtctaattaaagtaaaacagcATTTATAATTGATAACTGTGTGAAGTGACCACATCACTTCCCTGCTTTGAGGCAGCTTCacatatcaaattaaaacaaaatacccaCCCACTCGTCTCGGTCTGCAGGGTCATAGTTTAGGTCTCAGTGAAGCACCCTGCACTGGACATTAACCCAGGGTGAGTGGGCAGCCAGGCCCTCACGAGACCAGCCCCACACAAGgactttatttttgattattttaattcatattatgCCGTAATAAGGAAGTGCAGTATGGCTGAAAGATGTACAGAAACAAGGACAGCGGGAAAGAGAAGCAGATGCTCCAAATTGGCTGCTGGGCCCAAAGAGGAGCTGAGAGCAGCTGGGAGGTATTGGGCCAAAATATTAAGAtcccttttcttgttttttcttgtttgcttgcATTTGTCTGTCCCcaacatgaacacacacacacaaactggcACGCAGAGACgtacaaaagacacacacacaccaaccagGCTCATAAAGACCTGATATAGAACTTAAATTAGGATAAAGTGGTAGTAAAAATAATGATCTAAGAGTAAGGAATGGAGTAGGACAAGAGAACTAAtgagatattatatataatatataaatttataATTATCTTGGTAAGTAAATCTGGGTGCAACTTTACCTCTTTCAAGACTATTGCTACAATCTGTGAAAAACATCTTAAGTATCTATGTTCATATAGGTCCATAAGGCCAGACACAGAGGGCAGTGTCGGTTTGTGCCCAGCGGGATGTGCTGCCGGTTCAGCTGTCTGAAGTGCACAGAGTCCAGGTCCTAGGCCCCCTGACCGAGCAGACAGGATAGCACAAATGAAGAGTGAAAGCGAAAGAGGGAATCACATGATTACCCCCCCAAACAATCAATCCAAATGAAATGCTGAATTGATTTGGTCTGGACCGGACCGGCTCAGCTCTGAATGTCACAGTCCTTGAGGGTGGTATTTGCAGCCCACAGAGTGGTGGGTTTCCACCTtccccgggggggggggggttgagatAGGGAGTGttgggggggctgtgtgtgtgttgggagggCAGGGACAAAGTGAAGGGGGACTTTGACGAATGCCTGTCTAACCTCTACCCCTCCTGCTATTGTCATTCCTGGCACCCCGGtctcccactccctccctcctgtgTCCCTCCGCCATCAGTCATCTTTTGTCcctgcagggagagggagagagagagaggtcactTTTGAGGTAACAAATCATATCTGCATTTAAACTTGTTTCCTATGAATTAGTATAAGGTTCTGGTCTGTGTGCCTTTGTTATTGACTGATTCTGCACTCACCTCCCACTGTGAGCACCAGCGCCTGCAGGATGTCAGACAGAGACACTATGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65035 lncRNA downstream 128663 13307422 ~ 13309425 (-) False G51974
TU65023 lncRNA downstream 137805 13299338 ~ 13300283 (-) True G51965
TU65000 lncRNA downstream 180469 13253853 ~ 13257619 (-) True G51948
TU64999 lncRNA downstream 222093 13214272 ~ 13215995 (-) True G51947
TU65002 lncRNA downstream 226889 13209551 ~ 13211199 (-) True G51950
TU65235 lncRNA upstream 331934 13771560 ~ 13776929 (-) True G52131
TU65263 lncRNA upstream 383487 13823113 ~ 13830315 (-) True G52157
TU65338 lncRNA upstream 566101 14005727 ~ 14006439 (-) True G52214
TU65362 lncRNA upstream 687613 14127239 ~ 14127501 (-) True G52233
TU65441 lncRNA upstream 832348 14271974 ~ 14275087 (-) True G52296
AMCG00008859 mRNA downstream 107086 13328969 ~ 13331002 (-) True AMCG00008859
AMCG00008860 mRNA downstream 115558 13316867 ~ 13322530 (-) True AMCG00008860
AMCG00008861 mRNA downstream 133019 13302712 ~ 13305069 (-) True AMCG00008861
AMCG00008849 mRNA downstream 164107 13268534 ~ 13273981 (-) True AMCG00008849
AMCG00008853 mRNA downstream 179030 13257698 ~ 13259058 (-) False AMCG00008853
AMCG00008864 mRNA upstream 296 13439922 ~ 13456129 (-) True AMCG00008864
AMCG00008865 mRNA upstream 19935 13459561 ~ 13473216 (-) True AMCG00008865
AMCG00008866 mRNA upstream 41352 13480978 ~ 13487619 (-) True AMCG00008866
AMCG00008869 mRNA upstream 98367 13537993 ~ 13540286 (-) True AMCG00008869
AMCG00008874 mRNA upstream 140790 13580416 ~ 13584831 (-) True AMCG00008874
TU65044 other downstream 112861 13320274 ~ 13325227 (-) False AMCG00008860
TU65036 other downstream 128663 13307422 ~ 13309425 (-) True G51974
TU65001 other downstream 176266 13257706 ~ 13261822 (-) True AMCG00008853
TU64926 other downstream 340154 13090537 ~ 13097934 (-) True AMCG00008845
TU64897 other downstream 436200 13000826 ~ 13001888 (-) True G51867
TU65198 other upstream 245709 13685335 ~ 13686737 (-) True G52099
TU65308 other upstream 498825 13938451 ~ 13949091 (-) False G52187
TU65310 other upstream 504372 13943998 ~ 13983893 (-) True G52187
TU65929 other upstream 2045756 15485382 ~ 15505517 (-) False AMCG00008951
TU66056 other upstream 2397363 15836989 ~ 15837801 (-) True G52782

Expression Profile