RNA id: TU65235


Basic Information

Item Value
RNA id TU65235
length 521
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G52131
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13771560 ~ 13776929 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTAAATAAGATGGTTCGGAGACGGTAACGGCACAGCTGTGTAGAGCCAGTCATCCTGCCAGTAGACACAGAGGGAGCAGCTGCCGTCCTCACACCAGCACAGGAGAGACCGCTGCACGCCCCAGCCCTCCCCCACTCCCACGACTCCTCTCCTGGACAACCCCCACCCTGCTGCCTACCCCTCAGCCCCTCTGGGATAAATGATTTGTCTAGCTGAGCTCAGCAGGGTTGGGATACAGACCAGGACCCACACAGGTGAGTGGGTCATGGCCTCGATTTCGTCACGATCCCCATTAATGATATTCCAGAGTGTATCcgtaatggtttgatgggataTGTAATTCAATAGATAAATAACTAacttggtaaaaaaaaaaaaattcaatataAATCTTCAGAAGTTGAAAGCTTTGAGTTTTTAATGGGTTTCAACTTTCTGCCTGGAATGTGAAGCGATCACACTGGAGTAAAAATCTcatcacccctctctctctctctctctctctctatctatctatcta

Function

GO:

id name namespace
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65103 lncRNA downstream 315708 13373383 ~ 13455852 (-) True G52019
TU65126 lncRNA downstream 331934 13438088 ~ 13439626 (-) True G52041
TU65035 lncRNA downstream 462135 13307422 ~ 13309425 (-) False G51974
TU65023 lncRNA downstream 471277 13299338 ~ 13300283 (-) True G51965
TU65000 lncRNA downstream 513941 13253853 ~ 13257619 (-) True G51948
TU65263 lncRNA upstream 46184 13823113 ~ 13830315 (-) True G52157
TU65338 lncRNA upstream 228798 14005727 ~ 14006439 (-) True G52214
TU65362 lncRNA upstream 350310 14127239 ~ 14127501 (-) True G52233
TU65441 lncRNA upstream 495045 14271974 ~ 14275087 (-) True G52296
TU65464 lncRNA upstream 584004 14360933 ~ 14365179 (-) True G52314
AMCG00008879 mRNA downstream 170 13737882 ~ 13771390 (-) True AMCG00008879
AMCG00008878 mRNA downstream 37522 13720710 ~ 13734038 (-) True AMCG00008878
AMCG00008872 mRNA downstream 128185 13638657 ~ 13643375 (-) True AMCG00008872
AMCG00008873 mRNA downstream 162612 13585087 ~ 13608948 (-) True AMCG00008873
AMCG00008874 mRNA downstream 186729 13580416 ~ 13584831 (-) True AMCG00008874
AMCG00008882 mRNA upstream 54278 13831207 ~ 13839926 (-) True AMCG00008882
AMCG00008881 mRNA upstream 89725 13866654 ~ 13881491 (-) True AMCG00008881
AMCG00008887 mRNA upstream 114351 13891280 ~ 13897417 (-) True AMCG00008887
AMCG00008891 mRNA upstream 240421 14017350 ~ 14021503 (-) True AMCG00008891
AMCG00008890 mRNA upstream 264844 14041773 ~ 14042907 (-) True AMCG00008890
TU65198 other downstream 84823 13685335 ~ 13686737 (-) True G52099
TU65044 other downstream 446333 13320274 ~ 13325227 (-) False AMCG00008860
TU65036 other downstream 462135 13307422 ~ 13309425 (-) True G51974
TU65001 other downstream 509738 13257706 ~ 13261822 (-) True AMCG00008853
TU64926 other downstream 673626 13090537 ~ 13097934 (-) True AMCG00008845
TU65308 other upstream 161522 13938451 ~ 13949091 (-) False G52187
TU65310 other upstream 167069 13943998 ~ 13983893 (-) True G52187
TU65929 other upstream 1708453 15485382 ~ 15505517 (-) False AMCG00008951
TU66056 other upstream 2060060 15836989 ~ 15837801 (-) True G52782
TU66061 other upstream 2064735 15841664 ~ 15851809 (-) False AMCG00008964

Expression Profile