RNA id: TU65263


Basic Information

Item Value
RNA id TU65263
length 7178
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G52157
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13823113 ~ 13830315 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGTTAATAGCACATTAAGCACTTGACTAACAAATAGTCAATACATGCATTCATTGGACTAATCCGCTTCACAAAGGCTCCAAAAAACGCCAGAAGCAATTTGTCAGTAATAAAAGTACATCAAATCTTAggtttattattactatattttttttaatttctatttaaaaacaggCATTATATACAGCATCAGGcaggatattatatatattttgacatttgttttcttcggAAATACAGAGGGAAGGGGCGTGTCTATCGTCACGCTAGCACATTGGTTCGCGTCAAGTGTCTTACATTTAGTGCATCACTGCAGTACAAAGCGGATAtcgaaaaagaaaagaaaataaagtgcatttttttCTACCTACACAGAAGAGGAAGTTTCAGTCATCTAAGGCGTTTTCTTTAATTCTAGGCTTTGTATTGCATACAGAATTAAAAGGAAATCTTACCATTACAATAATCATCATTTCTAAAATTGTGCTTCAGAGGAGATCCAGAcctgtttcattattattccaCTGGGAAGAGAATAATAAATGATGATGAATGATGGAATTTGCATCTCCAGTCCTCAGGTCACATGGCCACTGTTGATGGGTTTTGTAACCTCCGTGCCCCTGGTATAAGTCAAGAGTGGCAAACAAATGAGATGTTAACTAAACAATTTTCAATCCATCAGGGGTTTATTTATGTTACTAAGAACTGGGCCAGATCCAAAGCCAGGAGCAGGGCCTTGTTTCCCAGAGGACCGTTGTTGAGGAGCACTCATTATAAACCTGCAGGACTGGATTGAAGGTTGTGCAGGAGGCAGCAGCTTCACCTCTACCAATCATTGCTATAAGCTCTGCCCAGAACCCACTGCTCTCCCTCAGTCTGGTTAAAGACTTGAAGTAGAATGTACCTTGAGAGGATGATTTTTTGCTTGTGATGTAAGCAGTGtcaacacacagatacatacagtACAATGATGGGACAAAAAGGACAGGCCCTCACATTAAGATGGACCGATATCTGAACTGAGCATGGCAAAAGGAAGAGCTTGTGGGTATTAGGGCAAGGGTgtgcagccctggtcctggagaaggcgAGCTCTGGCTCTGACACTCTGCGCTAATATATTATAGATTTCCGTGTTTCCCGGATCTCTGCCCATCGATCAGTTGAAGCTCCTGCAGGCCTGTGTCTCCAGGACCAGGCCTAAACAGTCTCTCCTCTCACATCCCCTAGGTGCTCATTTTCTACtcagcaacttttttttttttttttgtggtccataattttttttcttattttctgtgaTGTATTGCTCATgcttacattttgaattgtcTCTCCTCCcacctgtgtgagtgtgtgtgtgtatctcccAGCAATCTGCAATCCAGCCCCGAGCTACATCATATTGTGTGCGGACCTCGTAACACACTGCTCTGGTAACCTGGCATCTCTGAGAGTAGGCCCTTTCACAAAGCTCCAgtacttcatttaaataatctttttgctattaagattatttaaatgtttttgatgaCTGTATTTAGTTCCTTTGAGGAGTGGGCTGGGATTGGGTGATCACACAAATGTACTATAATACCCCTCAGCCCTGGTCCCTCCAAACCAGCAGGATGTGTAGGCTTTTTTAAggaagtgcaaaataaatagttatggGTCAGCGGGGGAAATATGAATTCCAGGCATTCGGAAAACCTAGATGTTTAGTGGCTCTCCTAGACCAGGGTTGGTTAGCCCATAATACGTATCAAATGTAGAGATCGACGCAGACGTTTTTGACACTGATACTGTTTTCTTCACAAACAATAaatctttatattttacttatagCTTTGTGAAAAGTGCCCccaatattttttactttttgggGTGGGAAgaattcaacatttaaaaacatattctgaATATAAGTTATCATTGCACACATTCCACTTCCATTAATTGCgatgtatttattcaaacaaGTTAAATACACCgtttcacacattttctttcaatatatattaacGTGGTGATCTTAAAACGCTACGCCCTATCCGGATCgctttatttttgcataaaaCGTGTTAATGGTCTAGGTTCAGAAACGGTAATTGGTGGGTTACTTGACTTAAATATGCTCTCTGTATACTTGTGTATAAAAACGTGAAATCATTCAAactgtttataataattatgagaAGGATAATTCATTAGTAAAGTATATGAgaactgtataaataaacaatcagcTTTTCATGCAACACTTGCATAGGGAAGAAAATTCTTTCAGGTCATGCTgtaattttttccaaaatactgAACAATTAAGTAGGTTTGAAACAGACATAGAAAGATGACAAAGCTGCAGTATATTGCAGAGAGAAGACTACATCAGCCCCACTGTTCCctggctgggctgggctgtgtggGGTATACATGTCGGCTCTTTTGTTACTGCTGTCCTTGTGTGCACTCCCAGGAATATTTCTGCTTGCACTTCAGTGTAAACATGCACTCCACTCCTAAGTGAACTCCAGATTGACAAAGAAGTGCAAAAGAAAACGAAACAGGGAAACCTTTCTTTTCAGCTCCTGCATTCTCTTCCTGCATCAATTACAATGCAGCAAATTTTGCAAAAGTAAGTCAAATGTGGAGGGAGaactacaaaatgaaatgaaacctacccaatcatttaatttgataaGTGTACCATTTAAACACCTGTCACGATGGCTTTCAGGAAAATGTCCCAGCAAATTTGTAATCAggagaaaacattaaatgaaaaaaaacaattctgagTTTCCAAAATTCACAAGGTTTTCCCGAGCGATTGCCATTAGTGTTCTCCAACGTACATTGCTCAGAAAAGCTCAAATAATCTAACCCCATTCCATATCAGCCTTGTCCCAGACACACAGCCTAGCCCGGTACCCATCCTGAAGGTGCCTGCAGCACAATTTGTGGGAACATGTCTGAAAACTTGGTGGGGGGGTTATAATAATAagataacaaatacaattaaaaaactcTGCCTGACAATAATATCAAGCAGAGAAGTCAAGTGCTAAGTCAAGAAGAGGCCTCCTGTTCCGGTGATAGGGAGGGGGATGGGAATGTTCTATCAAAGTTGTGTGTATTCAATCTGGGTGTCAccttttttgtagtttttgcaTTCACCATAGTCTgaagatgtttgtgttttgtttggtcactgaagtgtgtgtgtcagggggaGGATGTACAGGGCACAACAGCCAATCTTAGCTTATTCCTTTTAGTCATTGGTtttgaggagaggagaggagaggagagcagggTGTTTATAAACTGAATTCAGAACGACCGCATAGTGAAAACACTGTTTTGTATGTGTTCCATTGCTCGGCAGTGCACCGTTATCACAATACAGTGGTCTACAGACGCCACGTTTAGGAGACTCTCTGTATCTGGACACTGAAGTGCCAAAACAAGATGATCAGTTGGAGAAATAGAGCAGGACTGGTGGGAAAGGAGATCACTTAAATACTGCCACCACCAGAGGGTAACAATTGTGGATTTTAAACAGAGTGGAAGGGGGCAGGACCGGGTTGAATAGATGCGGAGTGTcatggtattttattttgttagtacAGGAATTTTGTCTGGCTGTTTAAACTCCTCCTTGTTGCTACAACTGACCAATCAGCCCTGATAATGGTGGTCTATCATTTGAATCGctgatattgattttaataactataataataattagaatatTAATGACAACAACATAATCTGTGATACTGTCGGTGTTTACTGTGATACTGTTGGCCAGCACCTGTCTAGTAAGTCTTGGCAGTGAAAAGACAGGggggctgttgttgttgttgttgtgaaaaTTAAGTATCTGTAGAACAATCAAAAAGCAAAACGACAATCAATAGGAGAGGTAGCGAGCTCCAGATAGACGTGTTCATGCGGCTCGCTCCAGATACGAATGAAGTGCAAGCTGGAAGAAGGCCAGAGGTGATAAGGCATGCAAGATACATTCCTGTGAGTCTGCGAGAGAAAGCATATGTGTGTGCGCTGTGTGTGCATGACTGAGTgtccctgtgtttgtgtgtctttacaTGGGGTCACCTGTTTCAGGAAAGGATTTGGGAATGTGCTGAATTCACTCCCCCCGCCATTATCAGATCACAAGGCCTATATACCGTCTGGCACACCACTATAATAAGTCGTGGCTGCCCCCCCTCCTCACAGTGCACTGCTGAAGTTGGACTTAGTTTAAGTGATATAGCAGTGCCTTTCGTGGTGCAGCACATCAAGGCACCGCACATGTGCAAAGTCGTGCAAGAATTTGATGacgatttttatatatatatatataatagaaatcGTGCTTGCCGCTCCACGGGCCTCATGGAAGGCCGGAATGTTTTAACTTTCGTCCCGATGTTTCAATGGGGTGAGCAGGCTGCCTGCCATAGAAGCACTGTGAGGCCGCCCCCTGGTGGTGTGAAAGACTAAAAGCCATGCACCCATGTGATCTGGGTGTGCATGACAGGACAGACTACAAACACAGCACCTAGAACATACTGCAGCTTCAACAGACATAggtccacccccccacccccaaaaaactaGCAACCCTCTGCTACTGTACTTTTTCCATAAAACTTTTAAATAGAAACAATCCTAAGTGTGTAAACATCGTaacattttttgtctttcataATAAGGTACAAGTtcatacagacaaacaaacgagaaaagaaaaaaaaactaacataaaaCCAAAGTGCCTTTGAATATTTACAAGTTCTCCAGATGTGTAAATCACCCAGTAGATAGAAAACATAGGAATTCATctcatatgtattcatttaatattatatatgtatatattttttaattcctgtcCTGACCTTAATGTGCAAATTATCCTGcaaattatgttattgttttcagttggttttattaatacatgcaATGACAAAGATACACGACGTCCAGGGTTTAAGGCCAGTCAGATAGAAATGCCCTATGCGAGAATAACACTGTAGGTATTGTGCCTAAACCAAGCGACACTTCAGCTGTCTAAGATGTATTTGAGAGTGATTGTGTTGTGCttatccaattattattattatttatttttaactctttCATGTTCACAAATTGGCagcacccccccctccctgttTTACAACATGAAAGGAGCATCATTTGGTTCCTATTTGTGCCAATGGATACTAATCTGATAAGCTTGGAATGTCTTTGAACTAAGGGTTATGGTCgaagtaaaaattaaaaaaacagacaaaaacaacaaaaaaaaatctagaaaattAATAGTAAGAGCGCAGcagtgttttaaaagaaaaacaggttttaCGTGTTCGTAGTCTCAGTATAGGTTTATAAGCCCTGCGGAGGACTTGATCTGGGGATATTATCGGGCCTAACTGCTATGACCTGCTGCCTCTGTGGAGCTCTGGGAGGGGTTTGGGAAATAACAGTGTGTGTGCCGGGATGTGGCCTCTCCACTGAGGGGTCAACTTCCGGCCTTCACCAATAAAACGTTTTGCGCAGCAACTGTATTTCAGCCACCGCATGGAAGACGAAGAGCAAAAAGTCCcaggaaaaaatgaaagaattgaTGTCGCATAGTTGGAGTGATGAGATGGCAACCCGGCTGTACACGGTGTTGTTTGCAAATAGACTAAAATATTTGCTGCAACAAatgagtggggaaaaaagaaagaaggaaagaaggaaaaaaaacaactccctACTGTTCTTTGTGAACAGggacattttacaataataccCCCACTCAACCCCCCACCCTCTGCCTACTACAAGCAAAAGGCAGATAGCACCCTTCCTTTAATAATATACAGGGCTGAGATGCAGGTTAAAGGAGTGGCCAGCAGTGTGACTATCTGTACTCTCATGGGAGACACAGAGGAGGTGAATCAGGGAGGCTGAGAAGAGACCAATGAGAGCCTAATGAGAGCAGCTATCTCTGTCAGCCCACAGCGCCCCGGAAGTTACAGATTTTTCGCACCCGGTACCAAATTAAAACACCATCGAAGCCCCATCTGGAGAGTGAGGccacatgtttttaatgtagctTCATTCTCTAATTTAAAATTTCAAtggattgattttaatttattttactcaaAGTTAATGATGGGCCTGACAGTAACGGGGATTGAGATGAGGACTGCGCTGCAGCCGAATCTCATCTGCAGCCACGCAGATGCCCCTTGTGTCCATGTACCGGTACACAACGTGGGTTTTTGGCTGAGTTGCAGGTGACACGTCTCTCCCTCTTGTCCCTTGTACTGTACATTCTGGAATCTTTGGAGGGCTGTTTGGGATAAGCTCTCTGTTTGCCTGAAAGCCAAAATGGACACAATGGGTTTTAACAAACTTCAAGTGCATTATAGATATATTTAGGAGCCAGGGAGCAGGAGTAGGCCAAGTTGGGGCCTAAACTTCAGTATCTACAGTTGGCTACCTTGGCACTGGCTTCCAGTCAACTCTTCCACTGAAGGACTCTCATCCAACTAGAATGTTAACTGCTTATTTGGCCCTTACATATTTTAGCGTCACTGATGTTGCAATGGATTAGAATGGAAGGCCTGTTCTGCATGCGTCTCAGTTCCAGGatctgcagccctggtcctggagagctgggGGAGTCTTCTGGTTTTCACCCCAGCTGAGCACTGTATGACCTGATCAGACCAATTCCCTCAGTGTCTCCCCCAACCCAGTGCTCAGGCCACACTGTGTGGTGCAATCTGTATTCCAGCCAAGCtgttaattacttaactgaactaataacCTAATTCCAAGTCAAGGAAATGGGAACTtgatcaatttatatttttcatcataagTGTACTtgatcaatatatatttttcatcataagAAATATTCAACTTTTTAACATCTGCATCTGCAAACAATTTTAGAAAAAGGCAGAACTGAGACATTTTACTCAGCCGGAACCAAATCGCAGAAGAGACACTGAGAACTGGCTTTGGGGAAATTTGTGAAATTGGTTGAACACAAGTTATCCAGGCGTCTCTGCTGCTTTCTAACCCGCTCCCCTTCTGACACAAGACTGCAgctgtccaggaccagggctggttGAATTTACACATCCATCCCTCCT

Function

GO:

id name namespace
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006814 sodium ion transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65235 lncRNA downstream 46184 13771560 ~ 13776929 (-) True G52131
TU65103 lncRNA downstream 367261 13373383 ~ 13455852 (-) True G52019
TU65126 lncRNA downstream 383487 13438088 ~ 13439626 (-) True G52041
TU65035 lncRNA downstream 513688 13307422 ~ 13309425 (-) False G51974
TU65023 lncRNA downstream 522830 13299338 ~ 13300283 (-) True G51965
TU65338 lncRNA upstream 175412 14005727 ~ 14006439 (-) True G52214
TU65362 lncRNA upstream 296924 14127239 ~ 14127501 (-) True G52233
TU65441 lncRNA upstream 441659 14271974 ~ 14275087 (-) True G52296
TU65464 lncRNA upstream 530618 14360933 ~ 14365179 (-) True G52314
TU65458 lncRNA upstream 543276 14373591 ~ 14378330 (-) True G52308
AMCG00008879 mRNA downstream 51723 13737882 ~ 13771390 (-) True AMCG00008879
AMCG00008878 mRNA downstream 89075 13720710 ~ 13734038 (-) True AMCG00008878
AMCG00008872 mRNA downstream 179738 13638657 ~ 13643375 (-) True AMCG00008872
AMCG00008873 mRNA downstream 214165 13585087 ~ 13608948 (-) True AMCG00008873
AMCG00008874 mRNA downstream 238282 13580416 ~ 13584831 (-) True AMCG00008874
AMCG00008882 mRNA upstream 892 13831207 ~ 13839926 (-) True AMCG00008882
AMCG00008881 mRNA upstream 36339 13866654 ~ 13881491 (-) True AMCG00008881
AMCG00008887 mRNA upstream 60965 13891280 ~ 13897417 (-) True AMCG00008887
AMCG00008891 mRNA upstream 187035 14017350 ~ 14021503 (-) True AMCG00008891
AMCG00008890 mRNA upstream 211458 14041773 ~ 14042907 (-) True AMCG00008890
TU65198 other downstream 136376 13685335 ~ 13686737 (-) True G52099
TU65044 other downstream 497886 13320274 ~ 13325227 (-) False AMCG00008860
TU65036 other downstream 513688 13307422 ~ 13309425 (-) True G51974
TU65001 other downstream 561291 13257706 ~ 13261822 (-) True AMCG00008853
TU64926 other downstream 725179 13090537 ~ 13097934 (-) True AMCG00008845
TU65308 other upstream 108136 13938451 ~ 13949091 (-) False G52187
TU65310 other upstream 113683 13943998 ~ 13983893 (-) True G52187
TU65929 other upstream 1655067 15485382 ~ 15505517 (-) False AMCG00008951
TU66056 other upstream 2006674 15836989 ~ 15837801 (-) True G52782
TU66061 other upstream 2011349 15841664 ~ 15851809 (-) False AMCG00008964

Expression Profile