RNA id: TU65310


Basic Information

Item Value
RNA id TU65310
length 4920
RNA type TUCP
GC content 0.41
exon number 6
gene id G52187
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13938451 ~ 13983893 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGATGTGGTTTATTCAGCTGACAGTACATTCTACAGGATGCACATAGTGAGGTCACATCAGCACAACACAGCTCATAGCTTCCTTTAATGCCTCCtcttaaaaattatatattggtCCTAAAAATATAGAAAGGAATAAATTTAAAGTCACAAAAAactgtacattattaaaaattattCACTAAACACCACATTTTGGTTATAGAAAAAGTGTGTCCCTTCAGTGTAAAAAGgaactttttttctcaattttattttgcatttccttttttttttttttttttttctttcatagaCCAGTTTAAATTTCAGTGTAAGAAACCAGAACTTTTAAATACACCAGAACCACTCTTCTtctccctgccccccaccccccgtgaAGTCCTGCTGGGTCAGCGCCAGGATCGCATACAGTCTGGAGGAATGGAAGATAGgtaaatgggaaaaacaaaaaacaaaacaaaaaacaaacctaaagaacaaaaccaaaaaaacagaccagacaaaaaaaattaaaaaataaataaataaatacacacggCTCCTACACCCAAGACCAGATTAGCTTCACATGAAAACACCAGACAGGCCTGCGCATTGGCAGaactacagcaaaacaaaaggaatgCCGCTCAGAGGAAATGCTGCTGAATAGCTGGAACGGCAGCAGATAAGCGGCCAACCGGGTGGGCAGCCTGGAGCCCCAGAACAATTAGCAGACCcagaaatgcatacatacatacatacatacatacatacatacaacaacCGATTAAGCCAAATACCCTTTTAAGTCACTCAGAGTTCAGACTAAATGAGAACCAGAAGACCCAGTACGGACTCTCTGCAGaaccagggctgcagaccctGCTGTACAGGACTGTACTGCGTCTCTCTCCAGGACGAGCACTTTCTTGCCCCATTTGTATCGCTATTAATACAAGTTATTATTGACTAGTATACTCTATTTAGCACCTGAAAATTACATGAACTGAGATAAAGTGACAATCATACGAATGCACTGGCTGAAGGAGCAGGCGGCGGCTCTGGCGCAACGCAAACTGATAATGGATTATTGAACAAAATGCCTGGAGGTAGAGAGAGGGAACGGCAgctctgtttttcctttgtttttttaaatataggaaatttaaataaaacgaTCAAGAGCCCCTACCATGTTTCACACAGCTAGTGTCCCAGGCCTGGTTCTGACTGCGACAGACCTGCATCAGCATCCCTGCCAGCCTGAGGAACATGTCCGCCTCCCTGCCCCACTACCCCCCAGATGCACTGCGCTGTGGCCCTGGCACTGCTGGGGTTCTGCTACCCTCTCTGGAAAACTTAAACCTCCTCACACcggtttcctttaaaaaaataaaaacctttttgtCTGCACGTTACACTACTGACTTCACCAAAAGGATCAGACTAAAAAACTAAACCCTAGATTACACACTAAAACCCAGCTTCCTGGAGCTTATTATTGCCATCGAGAGTTTTCTAGTGTGTGAAATCTGCTTTAttcctttaaaatgcattaaaatcgTGGGTTGTTACTGTTAAAATGACATGAGTCACATCTGCGAATCTGCGCCACCCACATCGCACTGGTGGTCTGCTCCCGCCATTGGACTAAAGTTTTGTCAATTGAACTTAATCTTCTCTGAAGTTTATACGCAAtccctttcatttaaaaaaaataaaataaaaatacggGCAACTTGAAATTCCCAGCTTCTCGAGAGCTTAAAAACACGAATTAAGAGGCGGGGGGGAGGGAATTCGGTTCATTGGGGCGAGTCATTGGCTGCGCCACTGTAGGTCAGCTCCTTCACGAGCCCAGTTGGAAACGGGCACGGAAGCTCTGAGCTCGCAAGGACGAGACCGGGAAGATGCCAACCGTGACAGCcattaatcaaaatacaatctatataaaacaaacatgtaaagtGACTgatctaaaacaacaaaaatatagaaTGATTTTCCTCCAATTCCTCTGATAACAGTACTGAGAGTAAAGCAGCATGGGATATCGGGAACCCACTGCCCTACCTGAGGAGGGACagatactaaaaaaaaatatatatttttttttgctttttttttttgtactggccatttaatgcattttctagACATCACTAATATGTGGTCTGTACACATTCACTATAACCTATTGCTATTAAATAATCCCAGCTAATCTtgtatcttttatatatataatatatatatttaaaaaaaatgcttctaGTCAACAGACTGCTACACTATAGTCTTCTAATGAAGGGATATTTTACACCCAAactcttaaaaagaaaaattcaTCATATTCCCAAACTCCACCTGTTCCTTCCCTGCCTGGAGCAGCCCACACCTTTAATGAACGTGTGGATTTCATCATTATGGGGCAGCACTTCCCAAAGTGAACAGTCTGGGCTGGTCAAAACCACACAGACCAGAGGGGAGGGGATGCAGTGGAGTGTGGGTCAGAAACTCAGTCCATTTCAGTCCAGCAGGAGATGGGCAAGTGAAGCCCTGCCACCATCACAGCCACAGCCACAGCCCCCAGCCAACCCGCAAAAACAAACACGAATGCAACTACTGCCCCCTCGAGCACAGGAGTGTGACAGGGAGCAGAGGGGGTGGAGTGTTGTCTGGAGAGCCCAAGGAGTGACGCCACTGTGACTCCGGCACCAGACGCAGGAGTGAGGCAgggaataaaagaaaagatatatatatacaaaatacaaaaatacaaacaaaaccaaagccTGAGACACCCCAGAGAGGTTGAGGTTCACTGGACACGCCTTCACTTCCTGCCACATGGTGCACACATGTCAGAGTAGAAGAGTTTGTAAGAAACTAAaagGTTGACATACATACTAGGAATAgtgtattatcttttttttttttttcttcactcttGCATTTGTATTCTGACAGTGCAAATACAGTTTGGTCATCTACAATCGCTTTTTTTCTTCCGTTTCCGACTGAGAAGCAACAAAACGCACAGCTGGAACCCTTGGCGTCTCCACTTGGCGTGGAGGGAGGGTTAAACAAGCACCAAATGCACAGGCTTCTTTGTGCTGCACCTTATCTGgacatgtattttttgtttgtaattttcgCTTACATATGGAAGAAAGAAATCCACAATGTCCCAATTCCTGCTTCTCAATGCCGTATAAAACAATGAATGGGAGCGAATCACCACAAACAGCTTTGTTACTCTGTGGAGTAGATATCATATATACTGGACATGTTAAAGTGACGTCTGGAACGTGTACAGTTTTTAAAGCAGCAAAACTTAAACTGAATACTAAAAACAAGGGGGAGAATGGGGattgtggaagaaaaacaacccccaccaaaaacaaaacaaacaaaattaaaaaccacCACACTGGCACAAACAGATTAAGTATGAAAACCAGGCACCCTTAAGAACAAAGCAGAGCGGAAAATAAAACTACAGCcccagtatttaaaatgctgtattttatgATACTAACAAATGTTTATGAACATTACCTGcaactgtaaaacacatttaagaaaactgTTTTCTCTTATACTTCAGCTAAGACTCATTACATCAAAAGAatggacagaggttctgcagaTCACCCCACAAACACCACTGACTGAAGGGGGGGCAGGACAACTTTATTGaagtagaaaagaaaagaggtgTAATTCTTCACTGTTTAGCTTGCATTTGGTTTGTTGATCAGCAAAGGCCACTGACATTTCAATGAATACAGAGCCTCACTGATCtccacaaaacattaaaaaataataattaaaaaaaagtttattacTTTATTCAGGTTCAAACCTCTTTGCACATTTCTCACCACTGCCAGttctgatttgatttattttgggtgtttttttttttaaatttaataaatgactAAACCTCACAACAGCATAAAGACTCAGTGAACAGTCCATGCACaacagaacagaagaaaaatcagcACTGTAGGATGTGTGCAGACTGGACAGTGCTGTGGTATGTATATCAACCCTCAGTGATGCATTTTTCTCAAATGGTTGtaaatggctttaaaaaaaaataatggaaaaacaatggTCTTATCGCATGGCTACCAACTCAAatctaaacatgtttttcttgttttttgatttcttctttattattaacAGTTTTGTGATGATTCTTTCTTCCAACTGTATAAGGATTCCTATACTCCTTGTTTACTCCAAATCAGGCATTTTTTCATCATCGCTATCTGCCGATTCCtcATCTTCTGCCCCATCCACTTCTGGCAACTCATCCTCTCCACCCATGGTATTCATCATCTCTGAGAAGCGGTCGAAGCTGGACAATTCCTCATCTGAATCATCCTCCCAGTCCTTCCAGTTATTGAAGTCAACACTGAGCCAGTTAAGCTTcgccttttcttttgttaaccGGGGCCATGACTTCCCAGAATCTGCTTTCCGTAAACAACACAAGACAGACCGATCTGTCCGTTTGTTTTTGGATTCCTGCATGCAAAAATATCACGAGAGGAAAAAAGTATCAGGCAAAGCAAACGACCCTTCTGTTGGATTCACTATGTGAAATCTGACTGTCATTTAATATATAGCAGTTTTCCACAGGTTGTTTAAGCACCTCAGTGCCGAGGTGCTATAATTTTcaattgcattataaatattGAACCAATGCGCTTACATTATCGAAAtatcattttcagtgtttacatCAAGATTTTGAGACCTGGGCCACCATTTTGGTACGTACAAAGGCCGATGCCGAACAAATGCTTCCATTTGGCTGATGAGCAAATCACAATATCCAATTATACCCAAAGTTGCCGCCCCCAAGAGATGTTTGCGCTTACAGAAAATCCTGGggaagactgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65263 lncRNA downstream 113683 13823113 ~ 13830315 (-) True G52157
TU65235 lncRNA downstream 167069 13771560 ~ 13776929 (-) True G52131
TU65103 lncRNA downstream 488146 13373383 ~ 13455852 (-) True G52019
TU65126 lncRNA downstream 504372 13438088 ~ 13439626 (-) True G52041
TU65035 lncRNA downstream 634573 13307422 ~ 13309425 (-) False G51974
TU65338 lncRNA upstream 21834 14005727 ~ 14006439 (-) True G52214
TU65362 lncRNA upstream 143346 14127239 ~ 14127501 (-) True G52233
TU65441 lncRNA upstream 288081 14271974 ~ 14275087 (-) True G52296
TU65464 lncRNA upstream 377040 14360933 ~ 14365179 (-) True G52314
TU65458 lncRNA upstream 389698 14373591 ~ 14378330 (-) True G52308
AMCG00008887 mRNA downstream 46581 13891280 ~ 13897417 (-) True AMCG00008887
AMCG00008881 mRNA downstream 62507 13866654 ~ 13881491 (-) True AMCG00008881
AMCG00008882 mRNA downstream 104072 13831207 ~ 13839926 (-) True AMCG00008882
AMCG00008879 mRNA downstream 172608 13737882 ~ 13771390 (-) True AMCG00008879
AMCG00008878 mRNA downstream 209960 13720710 ~ 13734038 (-) True AMCG00008878
AMCG00008891 mRNA upstream 33457 14017350 ~ 14021503 (-) True AMCG00008891
AMCG00008890 mRNA upstream 57880 14041773 ~ 14042907 (-) True AMCG00008890
AMCG00008904 mRNA upstream 400676 14384569 ~ 14389388 (-) True AMCG00008904
AMCG00008907 mRNA upstream 406296 14390189 ~ 14393018 (-) True AMCG00008907
AMCG00008911 mRNA upstream 508277 14492170 ~ 14495264 (-) True AMCG00008911
TU65198 other downstream 257261 13685335 ~ 13686737 (-) True G52099
TU65044 other downstream 618771 13320274 ~ 13325227 (-) False AMCG00008860
TU65036 other downstream 634573 13307422 ~ 13309425 (-) True G51974
TU65001 other downstream 682176 13257706 ~ 13261822 (-) True AMCG00008853
TU64926 other downstream 846064 13090537 ~ 13097934 (-) True AMCG00008845
TU65929 other upstream 1501489 15485382 ~ 15505517 (-) False AMCG00008951
TU66056 other upstream 1853096 15836989 ~ 15837801 (-) True G52782
TU66061 other upstream 1857771 15841664 ~ 15851809 (-) False AMCG00008964
TU66062 other upstream 1857771 15841664 ~ 15851809 (-) True AMCG00008964
TU66151 other upstream 1973774 15957667 ~ 15963617 (-) True G52834

Expression Profile