RNA id: TU65458


Basic Information

Item Value
RNA id TU65458
length 1245
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G52308
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 14373591 ~ 14378330 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGGGAACGCACAGGACAGTGCCAGCACCGCCATGGCTCTGCCGCCAGCTCTCCTGTTGTCATTTTCTCTCCCGTTAAAGAGGATGGATGTGTGGAACCCCTCTCACAGGGCACAATGCCACAAGATTACAAGAAAGTAAACAAAGctggaaaaatatttattttcgaTTGACCTACCAAATAAATGACACTTTTAGTTTAATCCAAATAAATATTCCCCCCAAAATTTTTAACCGCAGTTGTATTCCCCGGTAGCATCCCAGGATCAGTCTGGGCTGGAAAGGGGCTgctgtccccccacccccctaccTGTGCTCAGGGTCACAGGGGTTGGAGAGAGGGACTGTGGAGAGGATGCTCTGTAACATTTCCTCAAAAttaagggaaggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacatgtatacatattatttatttctctttaaattgtattgtgaGGCAAAGGAAGGAGGACAGTATCTGGGTGTATGAAAGCAACTGTGGCTACAGCAGCAGTCAGGCAGTAGTCTTGGAAGAGACGGCTGGAGTTTCCAATTGGAACGCTGAGGATTCAGAATCTCCTGCTGGCTTACTGTACTGGCCGGTGCTGGTCTGGTAGATGGGGGTGGGCACAGTCATGGTGGTCATGGCTGAAGAGGAGGGGTTGTCCTCCTCACCCTCGGTGCGAGCCGCCACCTCCTCTGCTGACAGCTCATTCAGGATCTTCCTGTGGGAGAGACGGCAGAGCATAAGTGCaggccctctctctccctctcttaccCCCTTTCCACCGCTCAcatatacataagaacatacgaaagtttacaaacgagaggaggccattcgacacatcgtgctcgtttggtgtccattaatatctaagtgatccaaggatcctatccagtctatttttaaatgttccaaaactttcagcttctaccacatcgctggggagtttgttccagattgtgacaactctctgtgtgaagaagtgtctcctgttttccgttttgaatgcataaaaacacactcactctcactcactctcctcTACAATTCTGGCCTATTAGCAGAATTCTGCCAGTGTGCCGTTGTTCCCAGCATGCCTGTACAGGAGCCACACTGCAAAGGAATGCAGCTCCTGCAAACTGACACAGCCTGAGCGGTCGAGTGTCAGAATGAGGCCAGGATTTACAGACCCGCTCAACCTGCTGGCAGGAGCACCTGGCTGAGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65464 lncRNA downstream 8412 14360933 ~ 14365179 (-) True G52314
TU65441 lncRNA downstream 98504 14271974 ~ 14275087 (-) True G52296
TU65362 lncRNA downstream 246090 14127239 ~ 14127501 (-) True G52233
TU65338 lncRNA downstream 367152 14005727 ~ 14006439 (-) True G52214
TU65263 lncRNA downstream 543276 13823113 ~ 13830315 (-) True G52157
TU65520 lncRNA upstream 135547 14513877 ~ 14514078 (-) True G52355
TU65530 lncRNA upstream 163736 14542066 ~ 14542499 (-) True G52362
TU65531 lncRNA upstream 164226 14542556 ~ 14545750 (-) True G52363
TU65555 lncRNA upstream 219637 14597967 ~ 14598418 (-) True G52387
TU65589 lncRNA upstream 315500 14693830 ~ 14712386 (-) True AMCG00008918
AMCG00008890 mRNA downstream 330684 14041773 ~ 14042907 (-) True AMCG00008890
AMCG00008891 mRNA downstream 352088 14017350 ~ 14021503 (-) True AMCG00008891
AMCG00008887 mRNA downstream 476174 13891280 ~ 13897417 (-) True AMCG00008887
AMCG00008881 mRNA downstream 492100 13866654 ~ 13881491 (-) True AMCG00008881
AMCG00008882 mRNA downstream 533665 13831207 ~ 13839926 (-) True AMCG00008882
AMCG00008904 mRNA upstream 6239 14384569 ~ 14389388 (-) True AMCG00008904
AMCG00008907 mRNA upstream 11859 14390189 ~ 14393018 (-) True AMCG00008907
AMCG00008911 mRNA upstream 113840 14492170 ~ 14495264 (-) True AMCG00008911
AMCG00008915 mRNA upstream 192122 14570452 ~ 14587950 (-) True AMCG00008915
AMCG00008916 mRNA upstream 227646 14605976 ~ 14612227 (-) True AMCG00008916
TU65310 other downstream 389698 13943998 ~ 13983893 (-) True G52187
TU65308 other downstream 424500 13938451 ~ 13949091 (-) False G52187
TU65198 other downstream 686854 13685335 ~ 13686737 (-) True G52099
TU65044 other downstream 1048364 13320274 ~ 13325227 (-) False AMCG00008860
TU65036 other downstream 1064166 13307422 ~ 13309425 (-) True G51974
TU65929 other upstream 1107052 15485382 ~ 15505517 (-) False AMCG00008951
TU66056 other upstream 1458659 15836989 ~ 15837801 (-) True G52782
TU66061 other upstream 1463334 15841664 ~ 15851809 (-) False AMCG00008964
TU66062 other upstream 1463334 15841664 ~ 15851809 (-) True AMCG00008964
TU66151 other upstream 1579337 15957667 ~ 15963617 (-) True G52834

Expression Profile