RNA id: TU65464


Basic Information

Item Value
RNA id TU65464
length 2613
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G52314
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 14360933 ~ 14365179 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

caaccccccacccccccaagtAATAACAACACAGCCgctgctgtaaaataaaaagcattttttgttgtttatttgcttttgcaattgaaatataaaacagtaattatcaccaatgtacaaaatgaaaaaNaaaaaaaaaaaagacactgaaGGAGACACTGAACACGGACCAAAAGCACCGGGAACGTGTGGAGCCGCAGAGACATCAGAGATTCACTGGACCAAGCAGCGCTGTGGTGgcaaccacaacaaaaacagcagcagagacagacagacagacaaacaatcagacaaacaaacagacatgttGTGGTGTTGCAGTATCACATCAAGTCCAGTCCTCCCCTCAGAATCAGAACCTACTGGCTGGGAACCAGGAGGAAAGGCCAGCAGTACGCAGGTCCCCTTACTACAGCAGCGACCCGGTTAAGAGGTTCCAGTGATGAGGAATCGGGGGGAGGCCTCCGCCTGCATCTCCTGAGGACTGGAGCcgagacacacagagatggagacgagacagagacagagacggggacagacacacacacacacacacacacacagacttcaATATGAAGActattaaatataaactggGCTATGTGCAGCTGAGCTGGATCAGTTGCTACAGTTCCCAAGTATTTTCTGGtgcaaaataatcaaacagacaaaacaaacagacaaacgcACACCACTGACAACAGTAAACAAGCCGATCACCGATTATCtaatttttcttttcccatATTCCACAAATGTTGTTTCCAAACTTTCCTCTTcctgggaaaataaaacaataaaaaataatagtactactaatatcaatattaaaataaaaatgaagaactTGTAACAGGGGTGTCTCTGCGTTGACCTCTTGTCCGTGTACGGCCAACTCACTGCCACATCACAGCTCCGTTAACACTTGACCTCttaaaatattagattttgtacataacaacaataacaaccaccaccacaacaacaagcAAATTAAATCAACCATAACCTCtcagagtattttttttttttttttttttttttaggtaaaACTGTACAGTTATCtctataaaacctttttttgtaatcgtggaaaaaaaaataataatacctagcCGTCTCTCTGCTCCCACTCCCAGACCCCACCCCAGGAGAGACCAGCTGGATGTCTGAAAtcaggacccccccccccccccccaccactgtcAAGTATGAACAGAGTGATACGATTTTCATCgtcaagttttaaaaataatatttgaaataaaataaaaacaatccagTAACTTCACGAACACACAGGGGCACAACAGTAGCACCCTGTGTTAAACCCCactgccaccaccaccagcacaCACCCTGACTCCCCTGGCACGCTGTTCAAATTGGTcaggaaataataattattaataatgattaaaaacacaacgATAATCCAGTAATGAAATGTCAGTAGGAAGCTCCACAGGCTGTCAGGCAGCACACGGCTCTGTTGGGAGACACCTGAGGTCTGGTTCCGTTTTCTCATTTGTTCTGTTCTTGTCTCACGTCTCCTGACAAACTAATATCCACTACAGCAGGGGATGGTGGTGGCAGTGGTACAGAGTCTCCGCCCGCTCACATTCTCTGAGCTGCAGCACTGGGGTGATCAGCCCAATTAACAGGATCGTCAGCCCCTAACAGAGGGAAGAACAGTCTctgtccaggaccagggctggtgACCCCTGCTTGAACAttcatgcacacactcacacgtgAATTCTGTGTAAGTGTGGGGAGGGAGCTCAGCTGGTAGCTGTGTGCACATGCCAACCAGACCTGTGTCCTCCTGCCTGCCAAGCATCAGACaggcagagtgtgtgtatggAAAGATACTTGTGCGTGTCCCCCAGTGGCCCCAGTAGTGTCCTCCTGTTCAGACTGAAGTCAATGTttgtgggggagggagggaaggtgGTAATGGTGTGGGGGTGCCAAtttaacactcacacacacaaattatatatatataacagacattaagatttaaaaacaaaacagaacttaGTCCCAGCACAGTCTGTTGAAATGAAACAGGACAGGGGTGGATGAAGTGGGGGGGGGaggcagacaaaaaaaaaaaaaaacacaaagcccaccttccccccccacccactcacCCCCTGTAATATTCAACCCTTGTGACCCCCTCCCACAAAGAGCTGAAGAATGCGGTTTCCCCAGGGTCTGTGGCTGTGTGGCCCCGGGTATCCCAGATGCTTGCCCAGGTGTAGTCCAGGTGTGACCTAATCCCCCCTCCAGTCTTATCCCCCAAGTGCTGCCTGGCAGGTACaggtgggagtgtgtgtgtagatggGGGGTAAGGGGGGGAGCATGTTTATTACATGTTGTAGGCCACGTAGATGGGGTCCAGCTGGTCGGCCAGGAAGCTGTCCCTCAGGTGCATGCGCTGCTTCTCCCCCCGCGAGTTGATGGGAATGACCCCAGggtccaccaccaccaccacgcCAACGATCAGGTGGTGCTCGTCCAGGACCACGTCCGTCACCAGCGGCACCAGGTCCAGGGCCTCCTGCTCCGAACCGCACAGCTCCACCACCACGACCAACAAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65441 lncRNA downstream 85846 14271974 ~ 14275087 (-) True G52296
TU65362 lncRNA downstream 233432 14127239 ~ 14127501 (-) True G52233
TU65338 lncRNA downstream 354494 14005727 ~ 14006439 (-) True G52214
TU65263 lncRNA downstream 530618 13823113 ~ 13830315 (-) True G52157
TU65235 lncRNA downstream 584004 13771560 ~ 13776929 (-) True G52131
TU65458 lncRNA upstream 8412 14373591 ~ 14378330 (-) True G52308
TU65520 lncRNA upstream 148698 14513877 ~ 14514078 (-) True G52355
TU65530 lncRNA upstream 176887 14542066 ~ 14542499 (-) True G52362
TU65531 lncRNA upstream 177377 14542556 ~ 14545750 (-) True G52363
TU65555 lncRNA upstream 232788 14597967 ~ 14598418 (-) True G52387
AMCG00008890 mRNA downstream 318026 14041773 ~ 14042907 (-) True AMCG00008890
AMCG00008891 mRNA downstream 339430 14017350 ~ 14021503 (-) True AMCG00008891
AMCG00008887 mRNA downstream 463516 13891280 ~ 13897417 (-) True AMCG00008887
AMCG00008881 mRNA downstream 479442 13866654 ~ 13881491 (-) True AMCG00008881
AMCG00008882 mRNA downstream 521007 13831207 ~ 13839926 (-) True AMCG00008882
AMCG00008904 mRNA upstream 19390 14384569 ~ 14389388 (-) True AMCG00008904
AMCG00008907 mRNA upstream 25010 14390189 ~ 14393018 (-) True AMCG00008907
AMCG00008911 mRNA upstream 126991 14492170 ~ 14495264 (-) True AMCG00008911
AMCG00008915 mRNA upstream 205273 14570452 ~ 14587950 (-) True AMCG00008915
AMCG00008916 mRNA upstream 240797 14605976 ~ 14612227 (-) True AMCG00008916
TU65310 other downstream 377040 13943998 ~ 13983893 (-) True G52187
TU65308 other downstream 411842 13938451 ~ 13949091 (-) False G52187
TU65198 other downstream 674196 13685335 ~ 13686737 (-) True G52099
TU65044 other downstream 1035706 13320274 ~ 13325227 (-) False AMCG00008860
TU65036 other downstream 1051508 13307422 ~ 13309425 (-) True G51974
TU65929 other upstream 1120203 15485382 ~ 15505517 (-) False AMCG00008951
TU66056 other upstream 1471810 15836989 ~ 15837801 (-) True G52782
TU66061 other upstream 1476485 15841664 ~ 15851809 (-) False AMCG00008964
TU66062 other upstream 1476485 15841664 ~ 15851809 (-) True AMCG00008964
TU66151 other upstream 1592488 15957667 ~ 15963617 (-) True G52834

Expression Profile