RNA id: TU65529


Basic Information

Item Value
RNA id TU65529
length 3116
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G52361
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 14542639 ~ 14545754 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAATGAATAAACCTTTCTTGAGGCGAGGGTCGGGGGTGTGGTGAAATGGGCAGTCTTAATGATGTCATGTAGATTGCTACTCTCAGGTTCCTATTTATTATCAGTCTGCACCCGTGGCGTTGTTCtgtgctggttttgttttgttttctgttttttattttattgtttcactGGCCTGGTGGTATGTTAAGGGCTTGGGATTGCAAGATAACCTTCAGAAAGACAAAAGACTAATCTAGACCAAAAATAAGCAGCAATGTCAGTGTGCATCAATCCCAGATCACGACTGAACCCCTGCTGCAGAGCACAGCCTTACAGCACATTGATCCTGCTGTGCTCAGTTCCCAGCACTACCCAATCTAAACTGAGGTACAGATTTGCAAACAAAGCAAGAGTACCTGACACAATGTTCTGAGTTTGGCACTGCTGCAAGAATTGAGTAAAGAAGGGCATATTTACCAGGCTCTGATCTCTGTTCTCACATTGGCAGTTTTGCCACAGCTTTCCGACAGAATCAGAGAGCCCTGCCACACAGGAACAGGCCAGAATCCTCAACAATGAAGGGAATGGTAGCAGAGTCGCCCCCTGCAGGAAAGCTGTGAAAAGCGATGCAGGTACATGTCAGTGCAGCGCAGTGTTCTGGATACCTGCTGTCTGTCTAATCAGCTCGACCCATATGTGAATAGGCGGCTTCAGTCTCTGacacactggctttgaaaggGGGGTTTGTCAACAGCCCTTGGGCTTGCTTTATTTAACGTTTTTGacgattgtttgtttttctgttgttgctttatttagttttttttttatctatgtAGTCTTGTTTCCAAATACTCAGGAAGAATTTCTTTACctcagaatgaaaaaaagaatgtaTGAGCCCCCCGCAGCACtgtgggggggctgggggggcgggGCTGCCCGTGGAGATCACAGAGCAGCTGAGCGTTTACCTCGGGAGACAAACTTGAAGTTGTTACCAAGACTAACGATGAATGTAATTCAGGTATTTTACAAAGGATATTTGATGCCATAaatccatgtttttaattatatatatctatatatatatatatatattttcttcccctatctcactttatttttactgtagAGTTTGGTGGAGTGATGTTTGTCATGTTATGATGTGTTCAGTAGactaagaggaaaaaaaaggaatgggaaaaaaaaaagtataaaaggttttttgtttagtttagttttggaCAAACCGTTTCCTGGCGATTTTGTGCAGTCGAGCCCCTGACAGCCCACAGCTCTCTCAATGGTCAGCCTGGGTGCCTGCCTGCTTTAAAAAACTATTAGAGTGATGGACCCATACTGAAATAATCATATCATAATTGTCTATATACGTGCACTTGTTCATCAAATCCTATGAGGCACTGATTCCCAGCTGTCAGGGCATTGTTCTTGCGGTGCTGCTGCTCAGCCAGCTCTTGAGTTACTGAATTGATTGATAATCAGTCCAGTAATGTGACTGAGGTACTGGCCACGACAGAGCCCTGTGCAGGAGCCCAGTAGGCAGGGCAGCTGTGATCCAGtctataatgtatattttcactgCAAAACCCAGACAATCCCAAGCTGTGGGGGCTGCCTGGCTGTAGTGCAGTCAGAGCTGAGTCTCTCGGTCAGTTTCATCCAGAAACACGGGTCAGaaaggatctctctctctccctctctccatctttaAAATGATGGATTGCAGTGTGCTGTGCAGCGTGCAGTGATGTGACTCCTTtctccctcccccacacacaaccCCTCTGAGCAGGGATGCCCTGATTGATGTCCAGTAACCCTATATTACTATTCAGCTCTTCAAGTACAGCTGGTGGCTTCAGTTAAGCTAGAGATGCCAGGTCAGTCAGAATGACCTCTACACATTGATCCAATGtttggaaacaaacaataatatatatatttcggACACGTATCCCACTCCTACTCAACATTGTTTGTCCTGGAAGTATGATgcagtttagtttttgttagaAGCATTTCTGAAGAACAGTCACAGCAAACAGTGATGTTATGTATTCATAActgctgaaaacaaaattaatatacacacccacacatgaAAAGGAATAGATCTATAAACTACATTATatacctgatgaagacacagtagtgtCGAAACGCGTTGTGGgtgattcaataaaatgaaattttaataatataaatgtctggtctaaataactaatgtgagagtgtggctacaaaatgttcttttcttttatatttatgtttatagaTCTATTCCTGTTCATGTCCCCTCTGTACTTCTCACATGTTTAATTACAGATACACAGCTGCTatccccagagagagagagagagagagagagagagagtgctgtgAGTCATAGTGCCATTCCAGCACAGTGGTTTTCGGATGCCAGTCTGTTCCCCTGCAGGTTTCTGGCACAGCATGCGCTTTACCTATTGTTTCCATTGACTGTGACTACCAGTGAAGGCAATGCTGTGAAAGCAGCTGTCTGTACAGGAGTCCTGCTAAGCGGGCACAGTGCCTATGGTCACACAGCTCCTCTTGGCCATCTTTTATTGCTCTCTATTATGTTTTCATCAGATACCCATGCGATACGGCCCGTAAGCCAGTGGCCCTCAGTTCTGATCCTGCAGTGTCTGCAGTGTCTGCAGCTCTTAGTCAACCAGCACTCTGAGCCCTGGCCATGGTAGGTACATTGGCCCATTTAAGCCAGTGAAATGGAGAGTTAAGGACTTGAAGGATCAATTACTGAACTAATTATTTGCTCAGGTGGACACAAGCAGTTGTTTTTACTGGGTTACTGGGGCTGTGGAGCGGTACTTTCACACAAAAACGGTTTGTCCAACAAATATGGTATTTAATTGCgaattccttatttttttagtaACTTTGTTCTTGTATCTTGTACATTCTCTGTAACCATTTCTACCTCATTTTTGCAACATATTGTAcatgaaagtatttatttcatgtcttttttgatgtctgttttaaaaataatgttttgaactCTAATGGTCTACCTCAGAAGAGACTGTATTTTAAGAGAAGTATTGAGCAGTATTAAAGAGATTACGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65363 lncRNA upstream 413948 14128487 ~ 14128691 (+) True G52234
TU65199 lncRNA upstream 854859 13686839 ~ 13687780 (+) True G52100
TU65130 lncRNA upstream 1065661 13476750 ~ 13476978 (+) True G52044
TU65030 lncRNA upstream 1227587 13313590 ~ 13315052 (+) True G51970
TU65029 lncRNA upstream 1230181 13311329 ~ 13312458 (+) True G51969
TU65532 lncRNA downstream 7142 14552896 ~ 14553241 (+) True G52364
TU65540 lncRNA downstream 14965 14560719 ~ 14561249 (+) True G52372
TU65542 lncRNA downstream 16691 14562445 ~ 14562710 (+) True G52374
TU65545 lncRNA downstream 30682 14576436 ~ 14576682 (+) True G52377
TU65546 lncRNA downstream 31083 14576837 ~ 14577055 (+) True G52378
AMCG00008910 mRNA upstream 391 14540200 ~ 14542248 (+) True AMCG00008910
AMCG00008909 mRNA upstream 50060 14488533 ~ 14492579 (+) True AMCG00008909
AMCG00008905 mRNA upstream 64525 14467759 ~ 14478114 (+) True AMCG00008905
AMCG00008906 mRNA upstream 86839 14419818 ~ 14455800 (+) True AMCG00008906
AMCG00008908 mRNA upstream 127904 14414349 ~ 14414735 (+) True AMCG00008908
AMCG00008912 mRNA downstream 86763 14632517 ~ 14649949 (+) True AMCG00008912
AMCG00008917 mRNA downstream 192695 14738449 ~ 14751657 (+) False AMCG00008917
AMCG00008920 mRNA downstream 237289 14783043 ~ 14795184 (+) True AMCG00008920
AMCG00008919 mRNA downstream 262938 14808692 ~ 14811757 (+) True AMCG00008919
AMCG00008921 mRNA downstream 277549 14823303 ~ 14832837 (+) True AMCG00008921
TU65523 other upstream 1681 14527818 ~ 14540958 (+) False AMCG00008910
TU65505 other upstream 59384 14481921 ~ 14483255 (+) True G52349
TU65027 other upstream 1233209 13306732 ~ 13309430 (+) False AMCG00008856
TU64983 other upstream 1284999 13254178 ~ 13257640 (+) False G51939
TU64968 other upstream 1317693 13222320 ~ 13224946 (+) True G51928
TU65601 other downstream 246415 14792169 ~ 14794972 (+) False AMCG00008920
TU65600 other downstream 246590 14792344 ~ 14794972 (+) False AMCG00008920
TU65619 other downstream 261543 14807297 ~ 14809286 (+) False AMCG00008919
TU66074 other downstream 1310470 15856224 ~ 15863654 (+) True AMCG00008960
TU66272 other downstream 1816348 16362102 ~ 16362511 (+) True G52942

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1682225 True 2154 TUCP 0.44 1 NC_048581.1 59674541 ~ 59676694 (-)