RNA id: TU65531


Basic Information

Item Value
RNA id TU65531
length 3195
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G52363
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 14542556 ~ 14545750 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTAATCTCTTTAATACTGCTCAATACTTCTCTTAAAATACAGTCTCTTCTGAGGTAGACCATTAGagttcaaaacattatttttaaaacagacatcaaaaaagacatgaaataaatactttcatgTACAATATGTTGCAAAAATGAGGTAGAAATGGTTACAGAGAATGTACAAGATACAAGAACAAAGTtactaaaaaaataaggaattcGCAATTAAATACCATATTTGTTGGACAAACCGTTTTTGTGTGAAAGTACCGCTCCACAGCCCCAGTAACCCAGTAAAAACAACTGCTTGTGTCCACCTGAGCAAATAATTAGTTCAGTAATTGATCCTTCAAGTCCTTAACTCTCCATTTCACTGGCTTAAATGGGCCAATGTACCTACCATGGCCAGGGCTCAGAGTGCTGGTTGACTAAGAGCTGCAGACACTGCAGACACTGCAGGATCAGAACTGAGGGCCACTGGCTTACGGGCCGTATCGCATGGGTATCTGATGAAAACATAATAGAGAGCAATAAAAGATGGCCAAGAGGAGCTGTGTGACCATAGGCACTGTGCCCGCTTAGCAGGACTCCTGTACAGACAGCTGCTTTCACAGCATTGCCTTCACTGGTAGTCACAGTCAATGGAAACAATAGGTAAAGCGCATGCTGTGCCAGAAACCTGCAGGGGAACAGACTGGCATCCGAAAACCACTGTGCTGGAATGGCACTATGACTcacagcactctctctctctctctctctctctctctctggggatAGCAGCTGTGTATCTGTAATTAAACATGTGAGAAGTACAGAGGGGACATGAACAGGAATAGAtctataaacataaatataaaagaaaagaacattttgtagccacactctcacattagttatttagaccagacatttatattattaaaatttcattttattgaatcacCCACAACGCGTTTCGacactactgtgtcttcatcaggtatATAATGTAGTTTATAGATCTATTCCTTTtcatgtgtgggtgtgtatattaattttgttttcagcagTTATGAATACATAACATCACTGTTTGCTGTGACTGTTCTTCAGAAATGCTtctaacaaaaactaaactgcATCATACTTCCAGGACAAACAATGTTGAGTAGGAGTGGGATACGTGTccgaaatatatatattattgtttgtttccaaaCATTGGATCAATGTGTAGAGGTCATTCTGACTGACCTGGCATCTCTAGCTTAACTGAAGCCACCAGCTGTACTTGAAGAGCTGAATAGTAATATAGGGTTACTGGACATCAATCAGGGCATCCCTGCTCAGAGGggttgtgtgtgggggagggagaAAGGAGTCACATCACTGCACGCTGCACAGCACACTGCAATCCATCATTTtaaagatggagagagggagagagagagatcctttCTGACCCGTGTTTCTGGATGAAACTGACCGAGAGACTCAGCTCTGACTGCACTACAGCCAGGCAGCCCCCACAGCTTGGGATTGTCTGGGTTTTGcagtgaaaatatacattatagaCTGGATCACAGCTGCCCTGCCTACTGGGCTCCTGCACAGGGCTCTGTCGTGGCCAGTACCTCAGTCACATTACTGGACTGATTATCAATCAATTCAGTAACTCAAGAGCTGGCTGAGCAGCAGCACCGCAAGAACAATGCCCTGACAGCTGGGAATCAGTGCCTCATAGGATTTGATGAACAAGTGCACGTATATAGACAATTATGATATGATTATTTCAGTATGGGTCCATCACTCTAATAGTTTTTTAAAGCAGGCAGGCACCCAGGCTGACCATTGAGAGAGCTGTGGGCTGTCAGGGGCTCGACTGCACAAAATCGCCAGGAAACGGTTTGtccaaaactaaactaaacaaaaaaccttttatacttttttttttcccattccttttttttcctcttagtCTACTGAACACATCATAACATGACAAACATCACTCCACCAAACTctacagtaaaaataaagtgagataggggaagaaaatatatatatatatatatagatatatataattaaaaacatggattTATGGCATCAAATATCCTTTGTAAAATACCTGAATTACATTCATCGTTAGTCTTGGTAACAACTTCAAGTTTGTCTCCCGAGGTAAACGCTCAGCTGCTCTGTGATCTCCACGGGCAGCcccgcccccccagcccccccacaGTGCTGCGGGGGGCTCAtacattctttttttcattctgagGTAAAGAAATTCTTCCTGAGTATTTGGAAACAAGACTacatagataaaaaaaaaactaaataaagcaacaacagaaaaacaaacaatcgtCAAAAACGTTAAATAAAGCAAGCCCAAGGGCTGTTGACAAACCCCcctttcaaagccagtgtgtCAGAGACTGAAGCCGCCTATTCACATATGGGTCGAGCTGATTAGACAGACAGCAGGTATCCAGAACACTGCGCTGCACTGACATGTACCTGCATCGCTTTTCACAGCTTTCCTGCAGGGGGCGACTCTGCTACCATTCCCTTCATTGTTGAGGATTCTGGCCTGTTCCTGTGTGGCAGGGCTCTCTGATTCTGTCGGAAAGCTGTGGCAAAACTGCCAATGTGAGAACAGAGATCAGAGCCTGGTAAATATGCCCTTCTTTACTCAATTCTTGCAGCAGTGCCAAACTCAGAACATTGTGTCAGGTACTCTTGCTTTGTTTGCAAATCTGTACCTCAGTTTAGATTGGGTAGTGCTGGGAACTGAGCACAGCAGGATCAATGTGCTGTAAGGCTGTGCTCTGCAGCAGGGGTTCAGTCGTGATCTGGGATTGATGCACACTGACATTGCTGCTTATTTTTGGTCTAGATTAGTCTTTTGTCTTTCTGAAGGTTATCTTGCAATCCCAAGCCCTTAACATACCACCAGGCCagtgaaacaataaaataaaaaacagaaaacaaaacaaaaccagcacaGAACAACGCCACGGGTGCAGACTGATAATAAATAGGAACCTGAGAGTAGCAATCTACATGACATCATTAAGACTGCCCATTTCACCACACCCCCGACCCTCGCCTCAAGAAAGGTTTATTCATTTGGCTCTTTGGggattgaaaaacataatatatatatgttttttttttttttacatatgtgtatatatgcacatatatatgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65530 lncRNA downstream 57 14542066 ~ 14542499 (-) True G52362
TU65520 lncRNA downstream 28478 14513877 ~ 14514078 (-) True G52355
TU65458 lncRNA downstream 164226 14373591 ~ 14378330 (-) True G52308
TU65464 lncRNA downstream 177377 14360933 ~ 14365179 (-) True G52314
TU65441 lncRNA downstream 267469 14271974 ~ 14275087 (-) True G52296
TU65555 lncRNA upstream 52217 14597967 ~ 14598418 (-) True G52387
TU65589 lncRNA upstream 148080 14693830 ~ 14712386 (-) True AMCG00008918
TU65593 lncRNA upstream 186373 14732123 ~ 14733797 (-) True G52421
TU65678 lncRNA upstream 294990 14840740 ~ 14850877 (-) False AMCG00008923
TU65723 lncRNA upstream 448820 14994570 ~ 15006197 (-) True G52518
AMCG00008911 mRNA downstream 47292 14492170 ~ 14495264 (-) True AMCG00008911
AMCG00008907 mRNA downstream 149538 14390189 ~ 14393018 (-) True AMCG00008907
AMCG00008904 mRNA downstream 153168 14384569 ~ 14389388 (-) True AMCG00008904
AMCG00008890 mRNA downstream 499649 14041773 ~ 14042907 (-) True AMCG00008890
AMCG00008891 mRNA downstream 521053 14017350 ~ 14021503 (-) True AMCG00008891
AMCG00008915 mRNA upstream 24702 14570452 ~ 14587950 (-) True AMCG00008915
AMCG00008916 mRNA upstream 60226 14605976 ~ 14612227 (-) True AMCG00008916
AMCG00008914 mRNA upstream 107700 14653450 ~ 14666770 (-) True AMCG00008914
AMCG00008913 mRNA upstream 125691 14671441 ~ 14681624 (-) True AMCG00008913
AMCG00008918 mRNA upstream 150976 14696726 ~ 14715322 (-) False AMCG00008918
TU65310 other downstream 558663 13943998 ~ 13983893 (-) True G52187
TU65308 other downstream 593465 13938451 ~ 13949091 (-) False G52187
TU65198 other downstream 855819 13685335 ~ 13686737 (-) True G52099
TU65044 other downstream 1217329 13320274 ~ 13325227 (-) False AMCG00008860
TU65036 other downstream 1233131 13307422 ~ 13309425 (-) True G51974
TU65929 other upstream 939632 15485382 ~ 15505517 (-) False AMCG00008951
TU66056 other upstream 1291239 15836989 ~ 15837801 (-) True G52782
TU66061 other upstream 1295914 15841664 ~ 15851809 (-) False AMCG00008964
TU66062 other upstream 1295914 15841664 ~ 15851809 (-) True AMCG00008964
TU66151 other upstream 1411917 15957667 ~ 15963617 (-) True G52834

Expression Profile