RNA id: TU65532



Basic Information


Item Value
RNA id TU65532
length 346
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G52364
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 14552896 ~ 14553241 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


caccgaagtcaaaacagcagagtccttgacctcattccggcgcttactcaagacgcatcttttccgacagtacttgtaatattagttctctatccctgctagatagcacttcacagttcatattatgcttctcgcgttcttgattgttttcctccttgctccctttcccgtagcccctgactgtgaccctacatcttgacagcacttagctttcaccgtccaggatgtaggaagtcacttactgtacttgtgtaaattgtaaattggaatttgtaaaatgtattattttgaattgctgttttagctaaattgaatttgtaatgattgatgccttgtacttctctgt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU65529 lncRNA upstream 7142 14542639 ~ 14545754 (+) True G52361
TU65363 lncRNA upstream 424205 14128487 ~ 14128691 (+) True G52234
TU65199 lncRNA upstream 865116 13686839 ~ 13687780 (+) True G52100
TU65130 lncRNA upstream 1075918 13476750 ~ 13476978 (+) True G52044
TU65030 lncRNA upstream 1237844 13313590 ~ 13315052 (+) True G51970
TU65540 lncRNA downstream 7478 14560719 ~ 14561249 (+) True G52372
TU65542 lncRNA downstream 9204 14562445 ~ 14562710 (+) True G52374
TU65545 lncRNA downstream 23195 14576436 ~ 14576682 (+) True G52377
TU65546 lncRNA downstream 23596 14576837 ~ 14577055 (+) True G52378
TU65547 lncRNA downstream 24850 14578091 ~ 14578322 (+) True G52379
AMCG00008910 mRNA upstream 10648 14540200 ~ 14542248 (+) True AMCG00008910
AMCG00008909 mRNA upstream 60317 14488533 ~ 14492579 (+) True AMCG00008909
AMCG00008905 mRNA upstream 74782 14467759 ~ 14478114 (+) True AMCG00008905
AMCG00008906 mRNA upstream 97096 14419818 ~ 14455800 (+) True AMCG00008906
AMCG00008908 mRNA upstream 138161 14414349 ~ 14414735 (+) True AMCG00008908
AMCG00008912 mRNA downstream 79276 14632517 ~ 14649949 (+) True AMCG00008912
AMCG00008917 mRNA downstream 185208 14738449 ~ 14751657 (+) False AMCG00008917
AMCG00008920 mRNA downstream 229802 14783043 ~ 14795184 (+) True AMCG00008920
AMCG00008919 mRNA downstream 255451 14808692 ~ 14811757 (+) True AMCG00008919
AMCG00008921 mRNA downstream 270062 14823303 ~ 14832837 (+) True AMCG00008921
TU65523 other upstream 11938 14527818 ~ 14540958 (+) False AMCG00008910
TU65505 other upstream 69641 14481921 ~ 14483255 (+) True G52349
TU65027 other upstream 1243466 13306732 ~ 13309430 (+) False AMCG00008856
TU64983 other upstream 1295256 13254178 ~ 13257640 (+) False G51939
TU64968 other upstream 1327950 13222320 ~ 13224946 (+) True G51928
TU65601 other downstream 238928 14792169 ~ 14794972 (+) False AMCG00008920
TU65600 other downstream 239103 14792344 ~ 14794972 (+) False AMCG00008920
TU65619 other downstream 254056 14807297 ~ 14809286 (+) False AMCG00008919
TU66074 other downstream 1302983 15856224 ~ 15863654 (+) True AMCG00008960
TU66272 other downstream 1808861 16362102 ~ 16362511 (+) True G52942

Expression Profile