RNA id: TU65547


Basic Information

Item Value
RNA id TU65547
length 232
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G52379
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 14578091 ~ 14578322 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGTCCAGGTCAGAGTGCATGTGGATGGGATACAGCTCCCCCAGGTGCAGCAGCTTCTCCAGAGCCTCGTAGATGAAAATCAGGCAGATCAGCGATGCGAAGGCCTCCTCCGTGAAGCGTGTGATGTAGCACACCAGAGAGCTGGCATCCGTGGCAACCAGCACCAGGCAAAGGAACGCTGTCCACAGCCCGATACAGGTTCGCAGAGACAGGTAGGACAGGTTATAGTCc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65546 lncRNA upstream 1036 14576837 ~ 14577055 (+) True G52378
TU65545 lncRNA upstream 1409 14576436 ~ 14576682 (+) True G52377
TU65542 lncRNA upstream 15381 14562445 ~ 14562710 (+) True G52374
TU65540 lncRNA upstream 16842 14560719 ~ 14561249 (+) True G52372
TU65532 lncRNA upstream 24850 14552896 ~ 14553241 (+) True G52364
TU65548 lncRNA downstream 4771 14583093 ~ 14583292 (+) True G52380
TU65550 lncRNA downstream 19645 14597967 ~ 14598452 (+) True G52382
TU65551 lncRNA downstream 28160 14606482 ~ 14606693 (+) True G52383
TU65552 lncRNA downstream 41639 14619961 ~ 14620283 (+) True G52384
TU65605 lncRNA downstream 172099 14750421 ~ 14754644 (+) True AMCG00008917
AMCG00008910 mRNA upstream 35843 14540200 ~ 14542248 (+) True AMCG00008910
AMCG00008909 mRNA upstream 85512 14488533 ~ 14492579 (+) True AMCG00008909
AMCG00008905 mRNA upstream 99977 14467759 ~ 14478114 (+) True AMCG00008905
AMCG00008906 mRNA upstream 122291 14419818 ~ 14455800 (+) True AMCG00008906
AMCG00008908 mRNA upstream 163356 14414349 ~ 14414735 (+) True AMCG00008908
AMCG00008912 mRNA downstream 54195 14632517 ~ 14649949 (+) True AMCG00008912
AMCG00008917 mRNA downstream 160127 14738449 ~ 14751657 (+) False AMCG00008917
AMCG00008920 mRNA downstream 204721 14783043 ~ 14795184 (+) True AMCG00008920
AMCG00008919 mRNA downstream 230370 14808692 ~ 14811757 (+) True AMCG00008919
AMCG00008921 mRNA downstream 244981 14823303 ~ 14832837 (+) True AMCG00008921
TU65523 other upstream 37133 14527818 ~ 14540958 (+) False AMCG00008910
TU65505 other upstream 94836 14481921 ~ 14483255 (+) True G52349
TU65027 other upstream 1268661 13306732 ~ 13309430 (+) False AMCG00008856
TU64983 other upstream 1320451 13254178 ~ 13257640 (+) False G51939
TU64968 other upstream 1353145 13222320 ~ 13224946 (+) True G51928
TU65601 other downstream 213847 14792169 ~ 14794972 (+) False AMCG00008920
TU65600 other downstream 214022 14792344 ~ 14794972 (+) False AMCG00008920
TU65619 other downstream 228975 14807297 ~ 14809286 (+) False AMCG00008919
TU66074 other downstream 1277902 15856224 ~ 15863654 (+) True AMCG00008960
TU66272 other downstream 1783780 16362102 ~ 16362511 (+) True G52942

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU365100 True 415 lncRNA 0.52 2 CI01000108 755709 ~ 756241 (+)
mexican tetra (Astyanax mexicanus) TU365100 True 365 lncRNA 0.44 2 NW_019171951.1 16349 ~ 17088 (-)