RNA id: TU65552



Basic Information


Item Value
RNA id TU65552
length 323
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G52384
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 14619961 ~ 14620283 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTGGTAGCTCAAAATGCACTCGGGGTCGTTGCTTCCTGCTGGCATCTCTCCCTTGCTTGGGTTGCTGTGGTGGTTTTAATTGTTGCAGTTGTTATTGCAGATGCTGTTCTAACCTGTAAGTGAGTCAGCCGGACTGGTCAGTCTGTCGGTCAGTCTCCCGGTGTCTACTGAATCAGCGGCTCGGATCTATGTTGTGTGTCCAGCATTCATCATCAGGAAGCGGTACTTTAGTTTTGTAGATGCGGCGACATTTACACCCCCGAGTCCAGCAACAAGACTACTTCTATCCtcccctctgtttctctctccctctttctctctgt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU65551 lncRNA upstream 13268 14606482 ~ 14606693 (+) True G52383
TU65550 lncRNA upstream 21509 14597967 ~ 14598452 (+) True G52382
TU65548 lncRNA upstream 36669 14583093 ~ 14583292 (+) True G52380
TU65547 lncRNA upstream 41639 14578091 ~ 14578322 (+) True G52379
TU65546 lncRNA upstream 42906 14576837 ~ 14577055 (+) True G52378
TU65605 lncRNA downstream 130138 14750421 ~ 14754644 (+) True AMCG00008917
TU65609 lncRNA downstream 145928 14766211 ~ 14831477 (+) True G52430
TU65621 lncRNA downstream 193212 14813495 ~ 14814414 (+) True G52439
TU65696 lncRNA downstream 361840 14982123 ~ 14982509 (+) True G52497
TU65697 lncRNA downstream 362290 14982573 ~ 14984525 (+) False AMCG00008931
AMCG00008910 mRNA upstream 77713 14540200 ~ 14542248 (+) True AMCG00008910
AMCG00008909 mRNA upstream 127382 14488533 ~ 14492579 (+) True AMCG00008909
AMCG00008905 mRNA upstream 141847 14467759 ~ 14478114 (+) True AMCG00008905
AMCG00008906 mRNA upstream 164161 14419818 ~ 14455800 (+) True AMCG00008906
AMCG00008908 mRNA upstream 205226 14414349 ~ 14414735 (+) True AMCG00008908
AMCG00008912 mRNA downstream 12234 14632517 ~ 14649949 (+) True AMCG00008912
AMCG00008917 mRNA downstream 118166 14738449 ~ 14751657 (+) False AMCG00008917
AMCG00008920 mRNA downstream 162760 14783043 ~ 14795184 (+) True AMCG00008920
AMCG00008919 mRNA downstream 188409 14808692 ~ 14811757 (+) True AMCG00008919
AMCG00008921 mRNA downstream 203020 14823303 ~ 14832837 (+) True AMCG00008921
TU65523 other upstream 79003 14527818 ~ 14540958 (+) False AMCG00008910
TU65505 other upstream 136706 14481921 ~ 14483255 (+) True G52349
TU65027 other upstream 1310531 13306732 ~ 13309430 (+) False AMCG00008856
TU64983 other upstream 1362321 13254178 ~ 13257640 (+) False G51939
TU64968 other upstream 1395015 13222320 ~ 13224946 (+) True G51928
TU65601 other downstream 171886 14792169 ~ 14794972 (+) False AMCG00008920
TU65600 other downstream 172061 14792344 ~ 14794972 (+) False AMCG00008920
TU65619 other downstream 187014 14807297 ~ 14809286 (+) False AMCG00008919
TU66074 other downstream 1235941 15856224 ~ 15863654 (+) True AMCG00008960
TU66272 other downstream 1741819 16362102 ~ 16362511 (+) True G52942

Expression Profile