RNA id: TU65555


Basic Information

Item Value
RNA id TU65555
length 452
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G52387
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 14597967 ~ 14598418 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaaaacttaactttaaataaacaagtgcacaaaacaacaaaacaaacgtgattaaagcaaaactgctaaccaacataaaagtcaaatacattgaaaataactgaaaatgcattggacaaaataaagaaacaattaaaaaggtaaaaataaaaaacaaacaaaaaaggtccaatgcatttaaaattaaatccaaaacggacaatgtatttgacaaaaaaatataacaaaactaaaccaaaaaacccctaaacaatttgtgttttaaaaccaactaaatctttaaaaacagttaaaaattcattcttaaaagtcattttaaaaacaatcattcataaaatggttaaaagatcttggactcgggctccagcagggggaactgaccATCCCCGGAGGTGatcatcatgggatcctgagctcccccagatcttgtatatgCCAGTTCTTATAGGCT

Function

GO:

id name namespace
GO:0048513 animal organ development biological_process
GO:0007275 multicellular organism development biological_process
GO:0048856 anatomical structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0007420 brain development biological_process
GO:0060322 head development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65531 lncRNA downstream 52217 14542556 ~ 14545750 (-) True G52363
TU65530 lncRNA downstream 55468 14542066 ~ 14542499 (-) True G52362
TU65520 lncRNA downstream 83889 14513877 ~ 14514078 (-) True G52355
TU65458 lncRNA downstream 219637 14373591 ~ 14378330 (-) True G52308
TU65464 lncRNA downstream 232788 14360933 ~ 14365179 (-) True G52314
TU65589 lncRNA upstream 95412 14693830 ~ 14712386 (-) True AMCG00008918
TU65593 lncRNA upstream 133705 14732123 ~ 14733797 (-) True G52421
TU65678 lncRNA upstream 242322 14840740 ~ 14850877 (-) False AMCG00008923
TU65723 lncRNA upstream 396152 14994570 ~ 15006197 (-) True G52518
TU65718 lncRNA upstream 396498 14994916 ~ 15023128 (-) True G52513
AMCG00008915 mRNA downstream 10017 14570452 ~ 14587950 (-) True AMCG00008915
AMCG00008911 mRNA downstream 102703 14492170 ~ 14495264 (-) True AMCG00008911
AMCG00008907 mRNA downstream 204949 14390189 ~ 14393018 (-) True AMCG00008907
AMCG00008904 mRNA downstream 208579 14384569 ~ 14389388 (-) True AMCG00008904
AMCG00008890 mRNA downstream 555060 14041773 ~ 14042907 (-) True AMCG00008890
AMCG00008916 mRNA upstream 7558 14605976 ~ 14612227 (-) True AMCG00008916
AMCG00008914 mRNA upstream 55032 14653450 ~ 14666770 (-) True AMCG00008914
AMCG00008913 mRNA upstream 73023 14671441 ~ 14681624 (-) True AMCG00008913
AMCG00008918 mRNA upstream 98308 14696726 ~ 14715322 (-) False AMCG00008918
AMCG00008924 mRNA upstream 158221 14756639 ~ 14765251 (-) True AMCG00008924
TU65310 other downstream 614074 13943998 ~ 13983893 (-) True G52187
TU65308 other downstream 648876 13938451 ~ 13949091 (-) False G52187
TU65198 other downstream 911230 13685335 ~ 13686737 (-) True G52099
TU65044 other downstream 1272740 13320274 ~ 13325227 (-) False AMCG00008860
TU65036 other downstream 1288542 13307422 ~ 13309425 (-) True G51974
TU65929 other upstream 886964 15485382 ~ 15505517 (-) False AMCG00008951
TU66056 other upstream 1238571 15836989 ~ 15837801 (-) True G52782
TU66061 other upstream 1243246 15841664 ~ 15851809 (-) False AMCG00008964
TU66062 other upstream 1243246 15841664 ~ 15851809 (-) True AMCG00008964
TU66151 other upstream 1359249 15957667 ~ 15963617 (-) True G52834

Expression Profile