RNA id: TU65593


Basic Information

Item Value
RNA id TU65593
length 1675
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G52421
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 14732123 ~ 14733797 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCCTCAGTAccccttttttctttattttctgtattctttctttgttttaaattatattcctAAATCTACCTCCATTACTCCATCTCtctttcacatacacacacacatactcacaagcacacacacaaacactcacacacacacacacacacacgcacacacacacacacacacacacacactcactcaggcACAGGtttctcagttttattaaaaaggtttaaattgtttaacaaaacaagatgaaagacagagagggagggagagaggagcagTGCGGTGTCTCCGGCTCGCTCCACTGCCTGCCTGACAAACAGGGGTCCctgaagagagagggaaagaggaaaagaaagaaactgagagagggagagatggaaggaAAGGGAAATAGAGAGACAAAgttaaagagagaaagaaaaggaaattgaggctaaaagggagagaaagaggagaagaGAAAAGGAGGGTGAGCGGGTGTTGCATGATTATTAAATACATCCATCTCCCTCTGAGCCCAGCCCCCTCCTCCCACCCTCTGCTTGTCTCTCGCTCCTTCCCTATCTTACTCTCTCTGTAGGATGCTGTGTTATACATTTCCAGTACGGATCTGGCTGTGATTGTAAAGAGCGAGTCTCCGGGGGGGCTGGCGTCGGGGTAGTTATGGAGGAAATGATAGACAGGACAATCCCTGGGCCCAGGAACACACCTGCGCAGACTTTCACTGTGCCTCCCAGTGTCTCTTCGCCAGCTTCTCTATCTTTGTCTCCATGTCTCTCTCCtatgctctcactctctctccctgagtGCACTCATGGCAAGTGGCCATCACGGGGCGCTGTGGCAGGAGCCGAGACTGACAGGGAGCCCCCACTCACAGGTATgaaattaataagtaaatataataaatgatgTATCCTCTAAAGGGATATTACCCCCCCAAGGGCAAGTGAGGTTTGGTCTTGGAGAAAGGAGGTTGGAGGTAGATGGCGAGAGTGGGGATGGGGGTGGAGGGGCAGGGCAGAGAAGAGAGACTGAAGGAGTTGCAATGCAACACCTACAGAGCCGGATTACTGGGCTGCGTCACTGTCTGAATCAGAGACCCCTGCACTTACGCAGTCTCTGCTGCTTGCTGGTCATCAGCAGaggattttttatatatttattttatttctgtttttgagtAACGGTGTAGGCTGGAGGATGAAGCTCTGCTCCTGTAAGCAGGGAGATTAGACCCTGGCTCGCTCTATGATCTCTGCCCACTCTGTGGGATCAGTGGCAGCTTTGTGGCGCAGCACTCCTGCCCGACGGGATGTGAGCAGCACAGATGGTCAAAAACAATTTCTCCTCGCCATTGATTGGCActgaaaagcaagaaaaagaaaggtcaGGGTGCAATTCTGTAATATTGAGAGACTGCTGCCTGTATTGTAGCTACTACTTGTTGGCAAaagcaggggtctccagccctggtcctggagaagtacagtacagtacagaaggtgtgggggtggggtgaaacactgctggtgggggggggggggggggggggggggggggggggggctgtggcTTGGCGCTCCGGTGAGCAAGTCTACAACTGAGTGCCAGCCAGCCGTGTTTACACACAGCAGTACATGCTGTTTATTAATCACAGGCTCGTCAAGTGCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65589 lncRNA downstream 19737 14693830 ~ 14712386 (-) True AMCG00008918
TU65555 lncRNA downstream 133705 14597967 ~ 14598418 (-) True G52387
TU65531 lncRNA downstream 186373 14542556 ~ 14545750 (-) True G52363
TU65530 lncRNA downstream 189624 14542066 ~ 14542499 (-) True G52362
TU65520 lncRNA downstream 218045 14513877 ~ 14514078 (-) True G52355
TU65678 lncRNA upstream 106943 14840740 ~ 14850877 (-) False AMCG00008923
TU65723 lncRNA upstream 260773 14994570 ~ 15006197 (-) True G52518
TU65718 lncRNA upstream 261119 14994916 ~ 15023128 (-) True G52513
TU65736 lncRNA upstream 309942 15043739 ~ 15048346 (-) False AMCG00008934
TU65737 lncRNA upstream 309942 15043739 ~ 15048346 (-) False AMCG00008934
AMCG00008918 mRNA downstream 16801 14696726 ~ 14715322 (-) False AMCG00008918
AMCG00008913 mRNA downstream 50499 14671441 ~ 14681624 (-) True AMCG00008913
AMCG00008914 mRNA downstream 65353 14653450 ~ 14666770 (-) True AMCG00008914
AMCG00008916 mRNA downstream 119896 14605976 ~ 14612227 (-) True AMCG00008916
AMCG00008915 mRNA downstream 144173 14570452 ~ 14587950 (-) True AMCG00008915
AMCG00008924 mRNA upstream 22842 14756639 ~ 14765251 (-) True AMCG00008924
AMCG00008925 mRNA upstream 33159 14766956 ~ 14770430 (-) True AMCG00008925
AMCG00008926 mRNA upstream 62553 14796350 ~ 14797477 (-) True AMCG00008926
AMCG00008927 mRNA upstream 66972 14800769 ~ 14805666 (-) True AMCG00008927
AMCG00008922 mRNA upstream 78077 14811874 ~ 14818996 (-) True AMCG00008922
TU65310 other downstream 748230 13943998 ~ 13983893 (-) True G52187
TU65308 other downstream 783032 13938451 ~ 13949091 (-) False G52187
TU65198 other downstream 1045386 13685335 ~ 13686737 (-) True G52099
TU65044 other downstream 1406896 13320274 ~ 13325227 (-) False AMCG00008860
TU65036 other downstream 1422698 13307422 ~ 13309425 (-) True G51974
TU65929 other upstream 751585 15485382 ~ 15505517 (-) False AMCG00008951
TU66056 other upstream 1103192 15836989 ~ 15837801 (-) True G52782
TU66061 other upstream 1107867 15841664 ~ 15851809 (-) False AMCG00008964
TU66062 other upstream 1107867 15841664 ~ 15851809 (-) True AMCG00008964
TU66151 other upstream 1223870 15957667 ~ 15963617 (-) True G52834

Expression Profile