RNA id: TU65816


Basic Information

Item Value
RNA id TU65816
length 3045
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G52594
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 15169322 ~ 15172366 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ataaatataatctattaacatgtctatttttgaaagcattcttactttacagcattttttcacacctgcctaacatttctgcacagtactgtacgtTGACCAattgactggacactacagcacagtctTACTGTTTTTTCCCtgtcctctttctctttctgtatcTGAAAATCTTTATTGGTGAGGTCTACTTGAATGTACTTAAAGCCTCTTAAAAATCCTTGTCCTTAACTGTTTATGGGAATGAGATCTGTCTATAGTTGATAGACCAATTAATTGGACTGTTCGAGAATACATATAGTATTTGGACATTCTAAGAATTCTAATCACCAGTTAATCCACCTAAAAATGTACCATATCATACCATACCAGATCTTATTTGACACCCCGTAGAAGTTTCCTTATGGTTATTATCCCCAGTCCGCTCTTTGGGCTTTGTTCTCTTGCAGTCTCCTGTactttattacatgttttatggGAAtgccaaagtgttttttttgttcttcagttGGGTGGCTTCTATTCTAAATTAATTGATGAGGAAATCCCTTTGGAACCACTCAATTTGCTGCTTGGTGATGACTCAGAGCTTCAATTGTCTGAACAGCATCGTAAAATATGGCTGGCTAGACTAACAGCAGCAAAAAACTGTGAAAGTCCAACACTGGCTCCATCCTCACCACCTACCCTTacagcaatggcttttttttactttaaagatAAAATTTGTTTCGAACATCCTACAGCCAGAATTAAAAGAGCCTAATCCTCTACACTGCTAATTTGGGGGGAAGCAGCAGACAAAGTATCCTTATTGTTGCAAACTGGCACAGTTTGGTGGGGAGGGGGATTATATTaggacataagaacatttacaaatgaaaggaggccattcgacccatcatgctcgtttggtgtccattaataactaagtgatccaaggatcctatccagtttatttttgtatgttcccaaattttcagcttcaaccacattgctggggagtttgttccagattgtgataactctctgtgtgaagaaatgtctcctgttttatgTCTTGAATGCCtataagcccaatttccatttgtgtccccagatctgtgtgtccctgcagatctggaaaagctcccctggtttgatgtggtcaatgcctttcatgattttgaagacttggatcaagtccccacgtagtctcctctgttccagggtgaaaaggttcaggtccctcagtctctccgagtaggacattcccttcaaacctggaataagtctggttgctctcctctgaactgcctctagagcaacgatatctttcttgaagtgtggagcccagaactgtacacagtataccaaatgaggtctaactagtgcattgtacagtcttaacattacttcccttgttttaaattctacacttttgacaatataccctagcattttgtttgccttttttattgtttccccacattgtttggatggagaaagtccacataaactcctaggtctttctcatgcgttacttaatCTATTCcttacatagtgtaattatagtggacatttttattacctgcatataataccttgcacttgtccacattgaatttcatctgccagttattatccaagtccctttgaataacttgtgctgccgagattgtatctgctgggccatttattttaatatcatctgcaaatttgacaagtttgctaactatcccagagtccagatcattaatatagattagaaaaagcaaaggccctagtacagatccctgtggaactccactaacaacctcactccagttagaagcgactcctctaatcgacaccctctgtttcctatacctcaaccagttcataatccatctacttacattaccctgaatatcTACAGCTTCCAagttgaggatcagtctttggtgtggaaccttatcaaaagctttctgaaaatctaggtatgtcatatcatatgctttcacatgatctacagctgcagttgcatgttcaaacaattctaataaattagtaagacatgatctgcctcgtctaaacccatgttgactatccccaaagaatatttttttcattgagatgctcctctattttctgtctaatcattttctgaaaataatttccataattTCATTAAGCagtgttggaaatataccatttggcccatgtgatttgtttgtgtttaattctgctagtccctttagtaactcctcttcatttatcctgatctctcatAGAGTTTGAATGGATTGATGGTTAACCTGTGGcattgtataattttttaattttgtaaaaacctctgtaaaatactaatttaatctTGTTCATTTATATGAACATACAATAAGTTGTATGTTCTGTTCTGTATAATAATACTcaacaaaataatactaaactgatgtgaaaaaattaaaaaacttttttggCATGGCTATTGAAATTGACAGACATGTCCAGTGCTCAAGAACAGGGCAATgggaaatctctctctctcccagtctctcagtatctctccctccctgtctcactctcgatctctctccctctccccttctgTCTCTCAGGCACAATGTAAACGAGGTTTATTCAAATGTGGGTGTGGACTGTGTCTCCGAGGAGCTGACTCAGCACGCAGACACATGAAAGACTGACTCCATATattgacacacaaatacacactaaCATACtgatagacacacacattaatgtactgatacaaacacacacacacacacttatatactGAAACACACATACTAATATACTGatagacacacaaacacctatATACtgaaacacacgcacactgatgtacacattgatacacacactcacacacgtcCCTCCCAGCCCATACACTCCCATCATAACAGCAGGAGGAAGCTGGTATATGACCCCAGTGTAGAGTGTATAACTGAGCTGCAAATCAGTCACTGTACTCTGTCACATCAAATGCACTCTCTcagtgatattattattacatttcttagcagtcAGTTAGtcaatctaaaatctaaaatgttaaaattg

Function

GO:

id name namespace
GO:0016311 dephosphorylation biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65736 lncRNA downstream 120976 15043739 ~ 15048346 (-) False AMCG00008934
TU65737 lncRNA downstream 120976 15043739 ~ 15048346 (-) False AMCG00008934
TU65738 lncRNA downstream 120976 15043739 ~ 15048346 (-) False AMCG00008934
TU65718 lncRNA downstream 146194 14994916 ~ 15023128 (-) True G52513
TU65723 lncRNA downstream 163125 14994570 ~ 15006197 (-) True G52518
TU65849 lncRNA upstream 65689 15238055 ~ 15239115 (-) True G52621
TU65897 lncRNA upstream 108530 15280896 ~ 15284268 (-) True G52666
TU65916 lncRNA upstream 243579 15415945 ~ 15477937 (-) True G52676
TU65923 lncRNA upstream 254550 15426916 ~ 15428651 (-) True G52683
TU65933 lncRNA upstream 334882 15507248 ~ 15513223 (-) True G52692
AMCG00008940 mRNA downstream 17117 15136403 ~ 15152205 (-) True AMCG00008940
AMCG00008938 mRNA downstream 57027 15109783 ~ 15112295 (-) True AMCG00008938
AMCG00008939 mRNA downstream 82103 15079065 ~ 15087219 (-) True AMCG00008939
AMCG00008933 mRNA downstream 98541 15066924 ~ 15070781 (-) True AMCG00008933
AMCG00008934 mRNA downstream 112116 15032347 ~ 15057206 (-) True AMCG00008934
AMCG00008937 mRNA upstream 4250 15176616 ~ 15182566 (-) True AMCG00008937
AMCG00008942 mRNA upstream 29902 15202268 ~ 15204656 (-) True AMCG00008942
AMCG00008943 mRNA upstream 129476 15301842 ~ 15328145 (-) True AMCG00008943
AMCG00008944 mRNA upstream 200179 15372545 ~ 15391050 (-) True AMCG00008944
AMCG00008945 mRNA upstream 227213 15399579 ~ 15400121 (-) True AMCG00008945
TU65310 other downstream 1185429 13943998 ~ 13983893 (-) True G52187
TU65308 other downstream 1220231 13938451 ~ 13949091 (-) False G52187
TU65198 other downstream 1482585 13685335 ~ 13686737 (-) True G52099
TU65044 other downstream 1844095 13320274 ~ 13325227 (-) False AMCG00008860
TU65036 other downstream 1859897 13307422 ~ 13309425 (-) True G51974
TU65929 other upstream 313016 15485382 ~ 15505517 (-) False AMCG00008951
TU66056 other upstream 664623 15836989 ~ 15837801 (-) True G52782
TU66061 other upstream 669298 15841664 ~ 15851809 (-) False AMCG00008964
TU66062 other upstream 669298 15841664 ~ 15851809 (-) True AMCG00008964
TU66151 other upstream 785301 15957667 ~ 15963617 (-) True G52834

Expression Profile