RNA id: TU65897


Basic Information

Item Value
RNA id TU65897
length 335
lncRNA type inter_gene
GC content 0.44
exon number 4
gene id G52666
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 15280896 ~ 15284268 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTCTCTGTTTTGCGCGGATGGGCGGTCGGAGCGCGTTAAGGGTTTTCTGTTAGAACGCTGTCGTTAATGAATGATCTTCGCATGAAAATCGAAAAATGTCTACATGACTTGGAGGAGGGATATTTCCAGAGTGCCACTAATGATGATGATGTTTCGCACTCACCAAAGGGGACTGAAGAATCCGCCCCCACAGATATAGGCCTACAGgacaatatattattacaagCAGAGACCACAAGAGAGTTACCATCCATAGAAAAACAGGTGAGGAaaggttttgtttaaatgtcctCCAGCTGTCAGTAAGGCATATGGATACTGAGGATGACCAAAG

Function

GO: NA

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65849 lncRNA downstream 41781 15238055 ~ 15239115 (-) True G52621
TU65816 lncRNA downstream 108530 15169322 ~ 15172366 (-) True G52594
TU65736 lncRNA downstream 232550 15043739 ~ 15048346 (-) False AMCG00008934
TU65737 lncRNA downstream 232550 15043739 ~ 15048346 (-) False AMCG00008934
TU65738 lncRNA downstream 232550 15043739 ~ 15048346 (-) False AMCG00008934
TU65916 lncRNA upstream 131677 15415945 ~ 15477937 (-) True G52676
TU65923 lncRNA upstream 142648 15426916 ~ 15428651 (-) True G52683
TU65933 lncRNA upstream 222980 15507248 ~ 15513223 (-) True G52692
TU66004 lncRNA upstream 319557 15603825 ~ 15623991 (-) False AMCG00008957
TU66005 lncRNA upstream 319557 15603825 ~ 15610700 (-) True AMCG00008957
AMCG00008942 mRNA downstream 76240 15202268 ~ 15204656 (-) True AMCG00008942
AMCG00008937 mRNA downstream 98330 15176616 ~ 15182566 (-) True AMCG00008937
AMCG00008940 mRNA downstream 128691 15136403 ~ 15152205 (-) True AMCG00008940
AMCG00008938 mRNA downstream 168601 15109783 ~ 15112295 (-) True AMCG00008938
AMCG00008939 mRNA downstream 193677 15079065 ~ 15087219 (-) True AMCG00008939
AMCG00008943 mRNA upstream 17574 15301842 ~ 15328145 (-) True AMCG00008943
AMCG00008944 mRNA upstream 88277 15372545 ~ 15391050 (-) True AMCG00008944
AMCG00008945 mRNA upstream 115311 15399579 ~ 15400121 (-) True AMCG00008945
AMCG00008951 mRNA upstream 185406 15469674 ~ 15485870 (-) True AMCG00008951
AMCG00008950 mRNA upstream 230366 15514634 ~ 15528761 (-) True AMCG00008950
TU65310 other downstream 1297003 13943998 ~ 13983893 (-) True G52187
TU65308 other downstream 1331805 13938451 ~ 13949091 (-) False G52187
TU65198 other downstream 1594159 13685335 ~ 13686737 (-) True G52099
TU65044 other downstream 1955669 13320274 ~ 13325227 (-) False AMCG00008860
TU65036 other downstream 1971471 13307422 ~ 13309425 (-) True G51974
TU65929 other upstream 201114 15485382 ~ 15505517 (-) False AMCG00008951
TU66056 other upstream 552721 15836989 ~ 15837801 (-) True G52782
TU66061 other upstream 557396 15841664 ~ 15851809 (-) False AMCG00008964
TU66062 other upstream 557396 15841664 ~ 15851809 (-) True AMCG00008964
TU66151 other upstream 673399 15957667 ~ 15963617 (-) True G52834

Expression Profile