RNA id: TU66036


Basic Information

Item Value
RNA id TU66036
length 207
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G52766
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 15763937 ~ 15764143 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agaaatcttgctgattgataggggatcaaatacttatttccctcattaacattcaaatcaatttataacttttttgaaatgcgtttttctggatttttttgttgttattctgtctctcactgttaaaatacacctaccattaaaattatagactgatcatttctttgtcagtgggcaaatgtacaaaatcaccaggggatcaaatac

Function

GO:

id name namespace
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005272 sodium channel activity molecular_function
GO:0015081 sodium ion transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65970 lncRNA upstream 60922 15627840 ~ 15703015 (+) True G52717
TU65931 lncRNA upstream 249919 15513535 ~ 15514018 (+) True G52691
TU65882 lncRNA upstream 332336 15412001 ~ 15431601 (+) True G52651
TU65860 lncRNA upstream 480392 15282700 ~ 15283545 (+) True G52632
TU65856 lncRNA upstream 516746 15246898 ~ 15247191 (+) True G52628
TU66055 lncRNA downstream 72842 15836985 ~ 15837809 (+) True G52781
TU66090 lncRNA downstream 115914 15880057 ~ 15895419 (+) True G52798
TU66093 lncRNA downstream 131287 15895430 ~ 15898067 (+) False AMCG00008965
TU66120 lncRNA downstream 188905 15953048 ~ 15955372 (+) True G52817
TU66175 lncRNA downstream 297697 16061840 ~ 16063714 (+) True G52856
AMCG00008954 mRNA upstream 113664 15641691 ~ 15650273 (+) True AMCG00008954
AMCG00008952 mRNA upstream 123002 15633723 ~ 15640935 (+) True AMCG00008952
AMCG00008953 mRNA upstream 140534 15622818 ~ 15623403 (+) True AMCG00008953
AMCG00008955 mRNA upstream 155629 15599331 ~ 15608308 (+) True AMCG00008955
AMCG00008949 mRNA upstream 241641 15519629 ~ 15522296 (+) True AMCG00008949
AMCG00008960 mRNA downstream 95421 15859564 ~ 15863670 (+) False AMCG00008960
AMCG00008965 mRNA downstream 132564 15896707 ~ 15910151 (+) True AMCG00008965
AMCG00008967 mRNA downstream 167173 15931316 ~ 15931979 (+) True AMCG00008967
AMCG00008966 mRNA downstream 179014 15943157 ~ 15951025 (+) True AMCG00008966
AMCG00008970 mRNA downstream 227970 15992113 ~ 15992550 (+) True AMCG00008970
TU65619 other upstream 954651 14807297 ~ 14809286 (+) False AMCG00008919
TU65601 other upstream 968965 14792169 ~ 14794972 (+) False AMCG00008920
TU65600 other upstream 968965 14792344 ~ 14794972 (+) False AMCG00008920
TU65523 other upstream 1222979 14527818 ~ 14540958 (+) False AMCG00008910
TU65505 other upstream 1280682 14481921 ~ 14483255 (+) True G52349
TU66074 other downstream 92081 15856224 ~ 15863654 (+) True AMCG00008960
TU66272 other downstream 597959 16362102 ~ 16362511 (+) True G52942
TU66345 other downstream 815720 16579863 ~ 16583929 (+) False AMCG00008983
TU66371 other downstream 908360 16672503 ~ 16673542 (+) True G53028
TU66558 other downstream 1566749 17330892 ~ 17339674 (+) True AMCG00008995

Expression Profile