RNA id: TU66056


Basic Information

Item Value
RNA id TU66056
length 813
RNA type TUCP
GC content 0.50
exon number 1
gene id G52782
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 15836989 ~ 15837801 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaaaaatctttattgcAGGACAAGACACTGGTGTGCTGTACAACAGGATGAATGGGCAGAGGCGAGGTGGAGGAGACTGGGAAAGGGTGAGAGAAGTGCATCTCCCTTATTTTaaactccctccctctctcatatatatatccAAATTTACAACACTGGTCTTCAATCTAtaggaatacaaaatggaagaaaaacaaaaacaaaaaaaacaatatacatttatacagacAGAATGGCACCAACTTACCCCCACAGGCAGAGTTGAATcttcaaaaattaaaacaaaaacaaaaatgcacttCCTATAACCTATAATCACTGGAGACTGTCAGTCAGTTGTGAACAGTGGAACAGTTTATAACCTAGTACAGTATAGTCCAGCAGGGTTTCCAGCCCTGGTCTTCGACAgatggagaccctgctgtacttgGTCTCTCCAGGCCCAGGGCTAAAGACTCTGCTGTACAATAGCTATCTGGGACCTTCTTTTACCCTATTCCCTCACCTCCCCTCGCTCAGTACCCTTCCATGGGGGGCTCCATCTTATACCCATTCTCATTGGACAGGTACCCCTCCCCCGACTGTAGGGACTCCTGGTCCATCAGGCCATCCTGGCTGTCCTCCTGAGGGGGGCCGTCACCACTCAGGCTCCCCCCGTCCTGCAGGAgcaagggagggaggaggagagaggaggaggaagcggcactggcagggaggaggaggctctgctgctgctgctgctgccggtCCTCCCTCcgctcccctctctccctttctcctctATCTCTCTTGTGCTcacgctccctctctct

Function

GO:

id name namespace
GO:0015629 actin cytoskeleton cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66047 lncRNA downstream 14771 15821186 ~ 15822218 (-) True G52774
TU66004 lncRNA downstream 212998 15603825 ~ 15623991 (-) False AMCG00008957
TU66009 lncRNA downstream 212998 15603825 ~ 15623991 (-) False AMCG00008957
TU66005 lncRNA downstream 226289 15603825 ~ 15610700 (-) True AMCG00008957
TU65933 lncRNA downstream 323766 15507248 ~ 15513223 (-) True G52692
TU66080 lncRNA upstream 21722 15859523 ~ 15863705 (-) True G52793
TU66084 lncRNA upstream 21722 15859523 ~ 15863705 (-) False G52793
TU66085 lncRNA upstream 27947 15865748 ~ 15865986 (-) True G52794
TU66108 lncRNA upstream 68072 15905873 ~ 15908407 (-) True G52808
TU66109 lncRNA upstream 70863 15908664 ~ 15910151 (-) True G52809
AMCG00008962 mRNA downstream 6360 15827700 ~ 15830629 (-) True AMCG00008962
AMCG00008963 mRNA downstream 35616 15788545 ~ 15801373 (-) True AMCG00008963
AMCG00008959 mRNA downstream 151939 15667816 ~ 15685050 (-) True AMCG00008959
AMCG00008958 mRNA downstream 176493 15649544 ~ 15660496 (-) True AMCG00008958
AMCG00008957 mRNA downstream 197859 15606943 ~ 15639130 (-) False AMCG00008957
AMCG00008961 mRNA upstream 15413 15853214 ~ 15857199 (-) True AMCG00008961
AMCG00008968 mRNA upstream 57887 15895688 ~ 15898166 (-) True AMCG00008968
AMCG00008971 mRNA upstream 225753 16063554 ~ 16064840 (-) False AMCG00008971
AMCG00008973 mRNA upstream 378737 16216538 ~ 16233132 (-) True AMCG00008973
AMCG00008974 mRNA upstream 436003 16273804 ~ 16289372 (-) True AMCG00008974
TU65929 other downstream 331472 15485382 ~ 15505517 (-) False AMCG00008951
TU65310 other downstream 1853096 13943998 ~ 13983893 (-) True G52187
TU65308 other downstream 1887898 13938451 ~ 13949091 (-) False G52187
TU65198 other downstream 2150252 13685335 ~ 13686737 (-) True G52099
TU65044 other downstream 2511762 13320274 ~ 13325227 (-) False AMCG00008860
TU66061 other upstream 3863 15841664 ~ 15851809 (-) False AMCG00008964
TU66062 other upstream 3863 15841664 ~ 15851809 (-) True AMCG00008964
TU66151 other upstream 119866 15957667 ~ 15963617 (-) True G52834
TU66179 other upstream 226424 16064225 ~ 16073935 (-) True AMCG00008971
TU66281 other upstream 566909 16404710 ~ 16405126 (-) True G52951

Expression Profile