RNA id: TU66080


Basic Information

Item Value
RNA id TU66080
length 2909
lncRNA type inter_gene
GC content 0.44
exon number 4
gene id G52793
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 15859523 ~ 15863705 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTGATAGCCGTCAACTGTCTGAACACAAATCATTGTCACTATCAGACGGGGCACTGTCCCGCATCACTCTTGCAAATATAGTACCTGTATATAGTAATACATAAGAAACCCACTCTCAAGATTAAAGTTAGGTTTCTTTATTCCATACATTATAccttatatttgtttttgtccggcaatgcatttattaatgttgATACAATGATTTGCCATATTACAGAAATGCCATTTAAACAAGTTAGATCCCCAACTAGACAGGAAACCTCCCTTGAGGAAAAAAGTGATAATCAAACATTATGATATCAACACAAGTTAGCACCAGGTGAAATGCAGCTCAACCAAAACAAGGGTAGGGTTTGAGTATGCATAACTATTTTAATTGATCATTGACaggtgcgcacacacacacacgcacacgcacactggTTTCCCCAAAGTCAGACACAGAGATGCCATTTAAAGagcaattgtttttattgatctcTATGGAGGTGTCCTTCTGTCCTCTAGAACTTCTGGAACTGTTTCTTAGCCCCAGCTGCCTTGGTGACCTTAAGCACATTGAAGCGCACGGTCTTACTGAGGGGCCGACATTCTCCCACGGTGACAATGTCACCCACCTGCACGTCCCTAAAAGATGAGAGAAGGGtcaatacagtacagactgGATACTGCAGTACATTCACACTAACTGGACAGACACACGGTCAATGTCTCCTCTCTGAGCTGCATCAGTGTTGCCATGAGGCGATGTCGTCAGAGCCACACAGGCTTGGAAGACCATCGTGAGAAAAACATCACTTGCAACTCAGACACCCCCTCTCGTGAGTGTTAGTGTGTAGTGTCTTGACAGTTAATAGGGGGTACAGGTGCACTGTATGTCAGTGTATATTTTACTACCTGAACAGGCATGCGTGTTACCTGAAGGCTGGGGACAGGTGCACAGACATGTTCTTGTGCCTCTTCTCAAAGCGGTTGTATTTGCGGATGTAGTGCAGATAATCCCTGCGGATCACTATGGTCCTCTGCATCTTCATCTTCGTCACCACTCAGACAGGATGCGTCCACGGATAGATACATTGCCGGTGAAGGGGCACTTCTTGTCAATGTAACTGCCCTCTATGGcTCTCTAGGAGTCTTGAAGCCCAGCCCCACACTCCTGTAGTATCTGGGCAGCTTCTCCTTAGCTCCATCCCCAAGCAGAGTGCGCTTCTTGTTCTGGAAGATGGTGGGCTGCTTCTGGTATGCCCTCTCAGTCTGgagcacagagagacacagtcagGAGACcgcaacagacagacaggacagatGGACAGGGGGCAGAGACTGTCAATGTACAGAGACAGGCATGGAGACAATATGGGGACAGATGCAGGAAAGAGACATGGGACAACCACCATACAGAACTTTAAAGCTGTAGAATTTACTGGAATTCTGAAAATTGTATGATAATTCTTGACTGCCATTTATTCAACATAATGACTTGATagagcaattaaaatatataaaatcaatgtccTGATTTTGAAAAACTGGGGAAAGTTCAgtgcaaatcaaaacaaaggtTTTATCTGTGCTAATGACCTGACAATATGGGAGAATGAATGTGGGTAAGACAGTCAGGGTATCCTCTCTGAGCTGCATCAGTGTTGCCATGAGGCTGTGTCGTCAGAGCCACACAGGCTAGGAAGACCATCGTGAGAAAAACATCACTTGCAGCTCAGTCTTTCTGCCCCTTCATCACTATCCTCTCCAGCATCCAGTTTCCCCATTTGTTCTGCACTACCGCCACCTCTCCCTCAGCCTCTAGCACCCAGTCTACTTCACTCTACATCTGAATGTATTATACACACGTTGTTTCCACTGTACTGGGTGTAACTACAACATAGAATGGGTTTAACAAATGTGGCGAGACAACGCCTGTATCTAAGGCGATGTACACGATTTTTTCAGAACGATTTattgttgaaatgtattgaacaaAGAGTCAACTGGACACAAACCGGTTTAAGCTGCCTTGCATTAAATAGTCTGAACTGTATCACCAATACGGTAATGCTGTTAAATAATTACTAAAGGTTTAGGACAATCCAAACCGTGTCGAATAAAGGAGTTTGAAATTATAACACGAATACAAATTTTGCTGGACGACAGTGGAAGAATCGCATTCATGGCTGGATACAAAACCCAGCGAGAAATAACTCGACTTCGGCGTTAAGTTTAAAAATCCACATGAACCAAGCAGCTTTGAAACCTAACGAAGAAGCGAACGAATATAATTACTCTTTGAACAGAGTGAACTACCAAatatacataaaagaaaaaaatccagaacAGGTCGGAATTGAATACGTGCAACCATCAGTGAAGATACGCAAGCCGGACCACTGTATCAAGTAATCGGTGCGGGACTTCACTCCGTCCACATGACAACCGGAAGCAAACgcatacattaatttgaatttatgtTGCTCTGGGTGCGAAATAGTTTAACAGTTGCGTTTATTATAGTAAGAATTACGGCTACGACAGAGAGACGATGggaatgtgtgtatttgaataCCACGGGCCTATTACTTGCCCGACAGATACACCAAACGAagcttaaaacaaatattttcattttttccgtCTCCAAACACCCAACCTCGTCTCAGCACTATCTCCCCTCGACAACCCCATTCCGTCTCTTTCATCTCGGCATGTTAAATCCATGTTTTGTGGCATTTTTGCAGTAGCCACGCCGTCCTCTCCCCTCACCTGCGTGTCCGCCATCTTGCACAGTCGTGTAGAAAAAGAGGCCCTTCATCCGGCGCACAGGGCCCAAATCTGCACGGGCGGGAAGTGACGTAAAGGTGAGGGCAAGCACAGGAGCCTACGAGAATGAAGCTAAATAGGAAGGACGCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66047 lncRNA downstream 37305 15821186 ~ 15822218 (-) True G52774
TU66004 lncRNA downstream 235532 15603825 ~ 15623991 (-) False AMCG00008957
TU66009 lncRNA downstream 235532 15603825 ~ 15623991 (-) False AMCG00008957
TU66005 lncRNA downstream 248823 15603825 ~ 15610700 (-) True AMCG00008957
TU65933 lncRNA downstream 346300 15507248 ~ 15513223 (-) True G52692
TU66085 lncRNA upstream 2043 15865748 ~ 15865986 (-) True G52794
TU66108 lncRNA upstream 42168 15905873 ~ 15908407 (-) True G52808
TU66109 lncRNA upstream 44959 15908664 ~ 15910151 (-) True G52809
TU66115 lncRNA upstream 66870 15930575 ~ 15931134 (-) True G52812
TU66117 lncRNA upstream 76391 15940096 ~ 15940302 (-) True G52814
AMCG00008961 mRNA downstream 2324 15853214 ~ 15857199 (-) True AMCG00008961
AMCG00008964 mRNA downstream 7713 15834040 ~ 15851810 (-) False AMCG00008964
AMCG00008962 mRNA downstream 28894 15827700 ~ 15830629 (-) True AMCG00008962
AMCG00008963 mRNA downstream 58150 15788545 ~ 15801373 (-) True AMCG00008963
AMCG00008959 mRNA downstream 174473 15667816 ~ 15685050 (-) True AMCG00008959
AMCG00008968 mRNA upstream 31983 15895688 ~ 15898166 (-) True AMCG00008968
AMCG00008971 mRNA upstream 199849 16063554 ~ 16064840 (-) False AMCG00008971
AMCG00008973 mRNA upstream 352833 16216538 ~ 16233132 (-) True AMCG00008973
AMCG00008974 mRNA upstream 410099 16273804 ~ 16289372 (-) True AMCG00008974
AMCG00008977 mRNA upstream 429611 16293316 ~ 16298256 (-) True AMCG00008977
TU66061 other downstream 7714 15841664 ~ 15851809 (-) False AMCG00008964
TU66062 other downstream 7714 15841664 ~ 15851809 (-) True AMCG00008964
TU66056 other downstream 21722 15836989 ~ 15837801 (-) True G52782
TU65929 other downstream 354006 15485382 ~ 15505517 (-) False AMCG00008951
TU65310 other downstream 1875630 13943998 ~ 13983893 (-) True G52187
TU66151 other upstream 93962 15957667 ~ 15963617 (-) True G52834
TU66179 other upstream 200520 16064225 ~ 16073935 (-) True AMCG00008971
TU66281 other upstream 541005 16404710 ~ 16405126 (-) True G52951
TU66358 other upstream 749519 16613224 ~ 16614461 (-) True G53017
TU66472 other upstream 989324 16853029 ~ 16913299 (-) False AMCG00008989

Expression Profile