RNA id: TU66090


Basic Information

Item Value
RNA id TU66090
length 1484
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G52798
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 15880057 ~ 15895419 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aattgattttgtttcttcagaTTCTGGTGTTTGAACAGTTTAAAGAGACAAGACCTACAGTTCACTCTGTCCGtctcctgtctctccctctcactctcagAGGATATGCACTAATGCACTCTCAGTCTCTTCCTCTCACTCCCCTTCCCTCTCACACCCTCTCCAACTGTGAGATAATTACTTCTAGATTCTCTCTTCTCTATCTagctctcactcactcactcaatcTCTCACTGCTtggatatatttattatcagagGATTCTCTCTTCTATatcactcactctctccctcctgtaGATCTGACCAATACTTAGGTCTGCAAGATATCAATGTACTCCTGTTGCCGGAATTGCAGCACCCACAGTGCACAGGGGGCAGAGATCCAGTCACTGGAGCACAGCTGCAAGGCCTCATGGGAAATATAGTCCAATAAGAACACTTGCAGTCCTCCAAACCATAGCACAGAATAAAGTGGCTGCAGTACAGAACAGTGTAGCCATTCTGAGTCCAAGGGGAACTACAATTCCCATACTGCACTGGGGAATATACCCAATCATTGGCAATGGAGGCCCGTTGCAAGTTCTCATGGGAATAGTAATCTAAGCAATTATAATCATTTTCTGCTGTTTACAGAAATATGGGAGAATGAGAGAAAACAGGTCAACCAAATGACAAAAAAcgattattactattattatgaatttGGACAGCACAATTGCTATattggctaaaaaaaaaaaaaactaaaatacagaataaaaaaaaaaattcttatactactacaacaataataatactaataataataggatcTTGGAGTGTTAAGACCTCTTGTGGCCATCTCCTGGTACGGCAGTCAACGAGACTCAGGCTGCTGCTGAGGAATCTAGAATgagtctgtactgtactatgattgtactgtgtacagtgtgactatactgtactgtgattTTACTGTGTATAGTGtgaatgtactgtactgtgattGTTCTGTGTTtagtgtctgtactgtactgtgattCTACTGTGTATAGTGTGACTACTATAGCATCCAGTCAGTCCgtcttactgtactgtagtgtccagtgaGTCGGTGTTAATaaactgtagtgtccagtcagccagtcagtcagtgttaatgtactgtagtgtgcagtcagtcagtcagtgtgtctgtactgtattacaccCCTCCCTCAGTAGTGCTGTGGTTTCTGGATGTCCCCAGTGTTCAGGCGGGGGCGGGGAAGGTCGCCGAACATCTCCGTGCCGTCGGTAACACTGAGGGTCAGTGCGCGCATGCTGGCCGCAATGTGGGCCAGGTCTGGACTGtcctgTCTCGGCGCTGTGGCTGTCTCCCTGAGGGGGGTGTCCCCCCCTGAAACCCCAGACGGGCACAGAGACGGGTAGGGAACGGGCAAGtgagggggggcgggggcagcGTGACGAGAACGAGGTTGTCCCCACGGCAATGCTGCGCTg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66055 lncRNA upstream 42248 15836985 ~ 15837809 (+) True G52781
TU66036 lncRNA upstream 115914 15763937 ~ 15764143 (+) True G52766
TU65970 lncRNA upstream 177042 15627840 ~ 15703015 (+) True G52717
TU65931 lncRNA upstream 366039 15513535 ~ 15514018 (+) True G52691
TU65882 lncRNA upstream 448456 15412001 ~ 15431601 (+) True G52651
TU66093 lncRNA downstream 11 15895430 ~ 15898067 (+) False AMCG00008965
TU66120 lncRNA downstream 57629 15953048 ~ 15955372 (+) True G52817
TU66175 lncRNA downstream 166421 16061840 ~ 16063714 (+) True G52856
TU66180 lncRNA downstream 190109 16085528 ~ 16085843 (+) True G52861
TU66185 lncRNA downstream 202821 16098240 ~ 16098446 (+) True G52863
AMCG00008960 mRNA upstream 16387 15859564 ~ 15863670 (+) False AMCG00008960
AMCG00008954 mRNA upstream 229784 15641691 ~ 15650273 (+) True AMCG00008954
AMCG00008952 mRNA upstream 239122 15633723 ~ 15640935 (+) True AMCG00008952
AMCG00008953 mRNA upstream 256654 15622818 ~ 15623403 (+) True AMCG00008953
AMCG00008955 mRNA upstream 271749 15599331 ~ 15608308 (+) True AMCG00008955
AMCG00008965 mRNA downstream 1288 15896707 ~ 15910151 (+) True AMCG00008965
AMCG00008967 mRNA downstream 35897 15931316 ~ 15931979 (+) True AMCG00008967
AMCG00008966 mRNA downstream 47738 15943157 ~ 15951025 (+) True AMCG00008966
AMCG00008970 mRNA downstream 96694 15992113 ~ 15992550 (+) True AMCG00008970
AMCG00008969 mRNA downstream 157130 16052549 ~ 16054525 (+) True AMCG00008969
TU66074 other upstream 16403 15856224 ~ 15863654 (+) True AMCG00008960
TU65619 other upstream 1070771 14807297 ~ 14809286 (+) False AMCG00008919
TU65601 other upstream 1085085 14792169 ~ 14794972 (+) False AMCG00008920
TU65600 other upstream 1085085 14792344 ~ 14794972 (+) False AMCG00008920
TU65523 other upstream 1339099 14527818 ~ 14540958 (+) False AMCG00008910
TU66272 other downstream 466683 16362102 ~ 16362511 (+) True G52942
TU66345 other downstream 684444 16579863 ~ 16583929 (+) False AMCG00008983
TU66371 other downstream 777084 16672503 ~ 16673542 (+) True G53028
TU66558 other downstream 1435473 17330892 ~ 17339674 (+) True AMCG00008995
TU66686 other downstream 1833947 17729366 ~ 17730660 (+) True G53298

Expression Profile