RNA id: TU66109


Basic Information

Item Value
RNA id TU66109
length 1348
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G52809
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 15908664 ~ 15910151 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAGATTCAATGGTCTTTTATTCGGCCAAGACAAACAACACAGTGACGCTACAGAAAAACGTCACAGCAAGCCCACCGTGCTGGTCTCACAGAGATTAACACAGGTTCTTAGACAACAGCGCAGGAAACGCCCCTGACATTCCTGTTGCAACCCTGCTCCAGCGGACACAATTACTGCCATTGGAAGACAGGAAAATTGATTATAGAGGATTATATGTGTGCTTATATATGGTAAGAgtatgtgtctttgtgtgtgttattgtaggTGGAGGTCTCCAAACTGGATAGACCATCATGTTGACTTTTGACCTCAAATCAACTCTACAAAtcatgatatatttaaaaagagagacagacagagagacttAGAGAAACAGAGAtagggagagacacagacagacacagagaaacacacagagagccacagatagacacacagagagacatagTGACAATGTTATCTGAAGCCACTGCCCTGAACAGAACTGATATAATCAAACCATGACTGTCTCGCAGTGTAGTGAGTGTagtgtaaataattatatagtTATGACACACCCTTtattaatcaatacattgaGAGACATTCACAGCTAGACCCCAGCAACACACATGCACTGCAGGTCACAAATCAAAGGGTTAAGGGTAGGTAGGGGGCGGGTGCTGGACCTCGGTCACGGCCCCTAATTGgctggaggtggtggtggtggattCTGATTGGATGAGAGGGCTGCTGGAACTACGCTCTGAGATGCCTGACTGGACAGGGAGGGGACAGAGACCCAAAACCTCCCGGACTTTGGCAGACACCAGGAGAGGAGCTCAGCTGGGTGTAGATGCCCTCAGCACAGCAGAGTACATAGGACACATCCAACTGCATTGACAGATCATTGATgtgctgagagagggagggagggagagacagacagagggagagatggaaagagagaatCACTGATATTTTAATCTAGAAACAGCGCCCCTACAATTTCAGGCAGAGAGGCAAAATGCAGCACTGTACAgtcataataacaatactactactagcgataacaataataaaattattaaaaacaaaaagaacaacaaaaacaaaaatagtaataTTGGGTAAACTGCAACAAACTGAGCGACTGAAGTTAGTCCCCAGTTGTGGAATAAAAAAGGTCTCCATTGCAACAAACCCCAAAAtaactgctgctgccctctagaggagactaagtaAGGGACTAACTTAGTCCTACTTCAGCTTTGGAATAACTATGGAAAGTACCATACTAAGCGGAACAAAATGTGataaatcacaaaatgtatgaatgtattgacacattttgtaactgaactaTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66108 lncRNA downstream 257 15905873 ~ 15908407 (-) True G52808
TU66085 lncRNA downstream 42678 15865748 ~ 15865986 (-) True G52794
TU66080 lncRNA downstream 44959 15859523 ~ 15863705 (-) True G52793
TU66084 lncRNA downstream 44959 15859523 ~ 15863705 (-) False G52793
TU66047 lncRNA downstream 86446 15821186 ~ 15822218 (-) True G52774
TU66115 lncRNA upstream 20424 15930575 ~ 15931134 (-) True G52812
TU66117 lncRNA upstream 29945 15940096 ~ 15940302 (-) True G52814
TU66144 lncRNA upstream 34647 15944798 ~ 15950331 (-) True G52831
TU66188 lncRNA upstream 214812 16124963 ~ 16126267 (-) True G52866
TU66195 lncRNA upstream 219130 16129281 ~ 16130351 (-) True G52873
AMCG00008968 mRNA downstream 10498 15895688 ~ 15898166 (-) True AMCG00008968
AMCG00008961 mRNA downstream 51465 15853214 ~ 15857199 (-) True AMCG00008961
AMCG00008964 mRNA downstream 56854 15834040 ~ 15851810 (-) False AMCG00008964
AMCG00008962 mRNA downstream 78035 15827700 ~ 15830629 (-) True AMCG00008962
AMCG00008963 mRNA downstream 107291 15788545 ~ 15801373 (-) True AMCG00008963
AMCG00008971 mRNA upstream 153403 16063554 ~ 16064840 (-) False AMCG00008971
AMCG00008973 mRNA upstream 306387 16216538 ~ 16233132 (-) True AMCG00008973
AMCG00008974 mRNA upstream 363653 16273804 ~ 16289372 (-) True AMCG00008974
AMCG00008977 mRNA upstream 383165 16293316 ~ 16298256 (-) True AMCG00008977
AMCG00008976 mRNA upstream 409217 16319368 ~ 16322631 (-) True AMCG00008976
TU66061 other downstream 56855 15841664 ~ 15851809 (-) False AMCG00008964
TU66062 other downstream 56855 15841664 ~ 15851809 (-) True AMCG00008964
TU66056 other downstream 70863 15836989 ~ 15837801 (-) True G52782
TU65929 other downstream 403147 15485382 ~ 15505517 (-) False AMCG00008951
TU65310 other downstream 1924771 13943998 ~ 13983893 (-) True G52187
TU66151 other upstream 47516 15957667 ~ 15963617 (-) True G52834
TU66179 other upstream 154074 16064225 ~ 16073935 (-) True AMCG00008971
TU66281 other upstream 494559 16404710 ~ 16405126 (-) True G52951
TU66358 other upstream 703073 16613224 ~ 16614461 (-) True G53017
TU66472 other upstream 942878 16853029 ~ 16913299 (-) False AMCG00008989

Expression Profile