RNA id: TU66175


Basic Information

Item Value
RNA id TU66175
length 1875
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G52856
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 16061840 ~ 16063714 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggAACATACTTTTTATTGAGAAGATTGTCCACAGAGTCTTCCTCTGTCTGTAAACCCTTTCTCTGCCTCTGTGGCTCTCAATACCCCAAGTGAGGAAACTAGCACCATTTTGGCTCTAACACAGAGACTGCTTATGCAGCAGGCTACAGCACCAAAAAGCCAAGATGTCCACCAGCATGAcccagtttcagtttttttactCCATTAAGAAACTAGCACCATTAGGCTCTGACAAAGAAATCCACTTATACAGGGCTAGTGTTAGATAGagccaagatggctgacagtAGTCAACATTGGACATATTTCATTAACTGTTTGCCCCACCCGTGAGCCTCTGACTTTTTTACACCAAAAAAAAGTCACCAGGTAATGCTCAATGAACTGTAGTTAAACAACTCGGTGGGTGACCAGACTTGAGAGAAAGGGCCAAGTGGTTTTATTCACCACTCATGGAGGGAAGCAGCTCCTACACATTAActattgaaaaatgtttaaaaagattaattacacattataaagtttaaaaataagctAATATCAGAAGAGAATAGACGAGTTTTGAAGGAGTGTTGACATAAAGCAGTGGTTCTAAActaattaaggttcaattaagtaatcgagagctcggttggaactaaagccagcagggtagggggtcctccagcaCCAGAGTTGGGAACCATTGACATAAAGCACACAGTGGAGTctcttcagtgtgtttttaacttTATTGTTCAGTTGTTTTGGATACTGCTGAGTCTGGGGAATGTGTATGAGCTGCTTCCCTCCATGAGTGTCCCTTGTCTCTATATGCCGGGAACAGCCTGGGCTGCAGCAGCAAAACACAGCTTCTCAACTTACACAACTCGTCGCCTCACCTGGGAGTTTCCCGTGGTGAATAAAACACACCCATTTACTCCAATAGGAAACTAGCACCATTTTGACTCTGACAAAGGAGGCCACTTTTAATAGCAGGATATGGTAACATCGAGCAAAGATGTCCGACAGCTGGGCCCAACATCAGTATTTACTCCAAGAGGAAACTAGCACCATTTTGGCTCTGACAATGGAGACCAGATTTACATAGTAAGCTATGGGTAAAATGGAGCCAAGATGGCCAACAACATGGACTAACCAAAAGTAAGTAACATTTGTTGGTTCAGAGCCACATACATTCACCTTCTTctgttaattaatatatatatatacacatatatatgttttatgtatgtataattttttaCAGCAGAATAAATAGTCTTATCGAAATACAAGACAAATTTGTACATGCTTTAGAATTTAACAAATAGTGTTTAACTCAAAATAACttacatcaataataataataataataataataataataacaacaacaacaacaataacatttaaaattaaacacttatattaaacacttaaaaaagtAACCGAATACAGAATATTTACACAGttcaaaacatgtaatatttgAGGTCAATTAGTTATTGAGTCAAAATacagaaagagtgagagagaaggatACCTTCAATCACCACACCCCCTCCTGTCCTCCCCTCCATCTCTAGTTCTCTAGACAGTAGCACACTTTCCCTCTCCCTTCATCCACCTCCggccctctccctgtctctcacttcctccctctctctctagttCCTGCTGACCCTGGACAACAGCACacactcttcctctctccatctctattcctctctctctagtTTCTACTGACCGTGGCcagtagcacacacacacaggatgaGTCAATGCGGATCCAGCGCCAGCCCACACGCTTGTTCGCGTCGGCAGTCAGCGCTCGCACAAACGACTGTTTGACCTTGCACTCAGACACCCACTGCCTCCTGTCCACGCCCAGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66120 lncRNA upstream 106468 15953048 ~ 15955372 (+) True G52817
TU66093 lncRNA upstream 163773 15895430 ~ 15898067 (+) False AMCG00008965
TU66090 lncRNA upstream 166421 15880057 ~ 15895419 (+) True G52798
TU66055 lncRNA upstream 224031 15836985 ~ 15837809 (+) True G52781
TU66036 lncRNA upstream 297697 15763937 ~ 15764143 (+) True G52766
TU66180 lncRNA downstream 21814 16085528 ~ 16085843 (+) True G52861
TU66185 lncRNA downstream 34526 16098240 ~ 16098446 (+) True G52863
TU66199 lncRNA downstream 145234 16208948 ~ 16210044 (+) True G52877
TU66212 lncRNA downstream 179823 16243537 ~ 16244943 (+) True G52890
TU66218 lncRNA downstream 247678 16311392 ~ 16319852 (+) True G52896
AMCG00008969 mRNA upstream 7315 16052549 ~ 16054525 (+) True AMCG00008969
AMCG00008970 mRNA upstream 69290 15992113 ~ 15992550 (+) True AMCG00008970
AMCG00008966 mRNA upstream 110815 15943157 ~ 15951025 (+) True AMCG00008966
AMCG00008967 mRNA upstream 129861 15931316 ~ 15931979 (+) True AMCG00008967
AMCG00008965 mRNA upstream 151689 15896707 ~ 15910151 (+) True AMCG00008965
AMCG00008972 mRNA downstream 62427 16126141 ~ 16134060 (+) True AMCG00008972
AMCG00008978 mRNA downstream 367103 16430817 ~ 16451251 (+) True AMCG00008978
AMCG00008981 mRNA downstream 483903 16547617 ~ 16558958 (+) True AMCG00008981
AMCG00008979 mRNA downstream 497308 16561022 ~ 16564235 (+) True AMCG00008979
AMCG00008983 mRNA downstream 516149 16579863 ~ 16587381 (+) True AMCG00008983
TU66074 other upstream 198186 15856224 ~ 15863654 (+) True AMCG00008960
TU65619 other upstream 1252554 14807297 ~ 14809286 (+) False AMCG00008919
TU65601 other upstream 1266868 14792169 ~ 14794972 (+) False AMCG00008920
TU65600 other upstream 1266868 14792344 ~ 14794972 (+) False AMCG00008920
TU65523 other upstream 1520882 14527818 ~ 14540958 (+) False AMCG00008910
TU66272 other downstream 298388 16362102 ~ 16362511 (+) True G52942
TU66345 other downstream 516149 16579863 ~ 16583929 (+) False AMCG00008983
TU66371 other downstream 608789 16672503 ~ 16673542 (+) True G53028
TU66558 other downstream 1267178 17330892 ~ 17339674 (+) True AMCG00008995
TU66686 other downstream 1665652 17729366 ~ 17730660 (+) True G53298

Expression Profile