RNA id: TU66199


Basic Information

Item Value
RNA id TU66199
length 911
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G52877
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 16208948 ~ 16210044 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCCACAGGCTAGGCTTCCCTTCCTGGAGATTAAGGCAGAAGAACAAATGTTTACACCAGTAACTTGAATATAGTTACTCACCCATCCcagttgtttgggtttttattCAGGGTTGGTCCCCATATCTCTCTGCCATACAGTAGAATGGGCTGAATTAtgctattaaatatttttaaccagattttgattggtttgattttgatttgattttgaagaaATGCCCTGCATGCTTTTCCTTTCAGCTGTTATAGCGAGGCTACATGTGTCTGAAGAACTGACCCGTCAGTTGGTGTCTTTATTAacccgctccctctctctcaggtgctGGAGACCTCTGACATCCCAGCGGGTGTGGTCAACATtgtgagtggggagagggaTCACCTGACCCGGCACCTGGCGAATCACAGTGTAGTACAGACTCTGTGGTACTGGGGGTCACGAgaggGCTGTCAGTTTGTGCGGTACACTTGTGCTCGGGCTGGAAGGAGGATGTGGGTGAATGAGAGCGAGGGAGGAGCAGAGAGGGAGTGGGGCTACAGTCGGATAGAAGAGTCTCTCCAGCACAGCACTCAGTACAAACAAGTCTGGATCCCAAGTACAGTGTAGACAGAGACCgagagactgactgactgatccAGTGGCTGACGGTTACCCTACAATATCTTCACTGcgctgagagagacagacggagaCACTCAGTTAGATATTATGGTTTATCAACCCACTGATGGCAGTGCATTAAGGTCTGATTAACCAGATGATCCAATTAGCCTGACCAATTAGCTTGATTTGTCACTGGAATTGTGAGCCCAGGTAATTAAGGACATGTTAATTTCAAATCTCCTCTCAACAGTACATCTCTGTATGGTTTCGTATCTGATGGTTTAATAAAGTATTCTAACATTA

Function

GO:

id name namespace
GO:0008410 CoA-transferase activity molecular_function
GO:0008260 3-oxoacid CoA-transferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66185 lncRNA upstream 110502 16098240 ~ 16098446 (+) True G52863
TU66180 lncRNA upstream 123105 16085528 ~ 16085843 (+) True G52861
TU66175 lncRNA upstream 145234 16061840 ~ 16063714 (+) True G52856
TU66120 lncRNA upstream 253576 15953048 ~ 15955372 (+) True G52817
TU66093 lncRNA upstream 310881 15895430 ~ 15898067 (+) False AMCG00008965
TU66212 lncRNA downstream 33493 16243537 ~ 16244943 (+) True G52890
TU66218 lncRNA downstream 101348 16311392 ~ 16319852 (+) True G52896
TU66261 lncRNA downstream 132972 16343016 ~ 16344076 (+) True G52931
TU66263 lncRNA downstream 134212 16344256 ~ 16344678 (+) True G52933
TU66275 lncRNA downstream 159128 16369172 ~ 16369414 (+) True G52945
AMCG00008972 mRNA upstream 74888 16126141 ~ 16134060 (+) True AMCG00008972
AMCG00008969 mRNA upstream 154423 16052549 ~ 16054525 (+) True AMCG00008969
AMCG00008970 mRNA upstream 216398 15992113 ~ 15992550 (+) True AMCG00008970
AMCG00008966 mRNA upstream 257923 15943157 ~ 15951025 (+) True AMCG00008966
AMCG00008967 mRNA upstream 276969 15931316 ~ 15931979 (+) True AMCG00008967
AMCG00008978 mRNA downstream 220773 16430817 ~ 16451251 (+) True AMCG00008978
AMCG00008981 mRNA downstream 337573 16547617 ~ 16558958 (+) True AMCG00008981
AMCG00008979 mRNA downstream 350978 16561022 ~ 16564235 (+) True AMCG00008979
AMCG00008983 mRNA downstream 369819 16579863 ~ 16587381 (+) True AMCG00008983
AMCG00008982 mRNA downstream 389616 16599660 ~ 16602244 (+) True AMCG00008982
TU66074 other upstream 345294 15856224 ~ 15863654 (+) True AMCG00008960
TU65619 other upstream 1399662 14807297 ~ 14809286 (+) False AMCG00008919
TU65601 other upstream 1413976 14792169 ~ 14794972 (+) False AMCG00008920
TU65600 other upstream 1413976 14792344 ~ 14794972 (+) False AMCG00008920
TU65523 other upstream 1667990 14527818 ~ 14540958 (+) False AMCG00008910
TU66272 other downstream 152058 16362102 ~ 16362511 (+) True G52942
TU66345 other downstream 369819 16579863 ~ 16583929 (+) False AMCG00008983
TU66371 other downstream 462459 16672503 ~ 16673542 (+) True G53028
TU66558 other downstream 1120848 17330892 ~ 17339674 (+) True AMCG00008995
TU66686 other downstream 1519322 17729366 ~ 17730660 (+) True G53298

Expression Profile