RNA id: TU66243


Basic Information

Item Value
RNA id TU66243
length 1077
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id G52918
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 16238758 ~ 16254139 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctatctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgagtgtgagtgtgtctgtttgtgtgtctgggaatgtgtctgtgtgtctgtatgtggaTGGAAACCCACCAATCACACAGTTAttccacacactcacagacagacagacagacacacagacagaaatgcagaaaCTAGACagatgttctctctctctgtgcctctctgtctgtctctctctgtctctggttATATGAGCGTGTCTGTATGTGAGTATGTGTGAGCGTGTTTGTGTttgggacagacagacacacagaaatacagacagaaaTATAGGAAATAGATACTCACACATTCTTAGACAGACAAAGTCTCCTTGCATTGCAGAaatagagaaaaagagagagagagatggagggacaGTGTTGCCTGTTTAATGTGACTGATTGAATGATATTTTTTgctggaaaatgaaaagactCAATTATATGGATATTTCAAAGGAatgtttctgtgtctttttatatttttaaaaactgtaaaaacagatcaaacaggggttaaaagtataataatttTAGATAATGCTTATACTGAACATAACTGTGCTTTCAATGAAAATTgcagaacaaatattttaacacagacttgactaataacaataataataatgataatgataataataataataataattgatatacataaaaaatcacaacaattatgttttttggggggtgggggggtggggaggttaATAATGAATGCTCTAATTTACCCCAAATGGCAGGACTCCTTTTAATAATGATATTTCAGACTAGTGTGGGGGggacaaaaatgcaaaaaaatgaaaaatacaacaaaaacaaaaacaaaacaaaaaataatcaaaaaaattaagaggaaaaaaataaataaataaaaaatccttgAAGCTTCTGCCAAAAGATctcttgtttctgttgttgtccTGTGTCTTTCCTGAGAGGGGGTTTGGGGTAGAGTCTCTTGATACACTGTCAGTCCACAAACTGGTGCAGAt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66240 lncRNA downstream 23743 16208865 ~ 16215015 (-) True G52915
TU66195 lncRNA downstream 108407 16129281 ~ 16130351 (-) True G52873
TU66188 lncRNA downstream 112491 16124963 ~ 16126267 (-) True G52866
TU66144 lncRNA downstream 288427 15944798 ~ 15950331 (-) True G52831
TU66117 lncRNA downstream 298456 15940096 ~ 15940302 (-) True G52814
TU66257 lncRNA upstream 57253 16311392 ~ 16313985 (-) True G52929
TU66268 lncRNA upstream 97873 16352012 ~ 16352300 (-) True G52938
TU66274 lncRNA upstream 108483 16362622 ~ 16362879 (-) True G52944
TU66334 lncRNA upstream 287129 16541268 ~ 16541555 (-) True G52999
TU66385 lncRNA upstream 419570 16673709 ~ 16729192 (-) True G53042
AMCG00008973 mRNA downstream 5626 16216538 ~ 16233132 (-) True AMCG00008973
AMCG00008971 mRNA downstream 173918 16063554 ~ 16064840 (-) False AMCG00008971
AMCG00008968 mRNA downstream 340592 15895688 ~ 15898166 (-) True AMCG00008968
AMCG00008961 mRNA downstream 381559 15853214 ~ 15857199 (-) True AMCG00008961
AMCG00008964 mRNA downstream 386948 15834040 ~ 15851810 (-) False AMCG00008964
AMCG00008974 mRNA upstream 19665 16273804 ~ 16289372 (-) True AMCG00008974
AMCG00008977 mRNA upstream 39177 16293316 ~ 16298256 (-) True AMCG00008977
AMCG00008976 mRNA upstream 65229 16319368 ~ 16322631 (-) True AMCG00008976
AMCG00008975 mRNA upstream 82276 16336415 ~ 16338708 (-) True AMCG00008975
AMCG00008980 mRNA upstream 224649 16478788 ~ 16519566 (-) True AMCG00008980
TU66179 other downstream 164823 16064225 ~ 16073935 (-) True AMCG00008971
TU66151 other downstream 275141 15957667 ~ 15963617 (-) True G52834
TU66061 other downstream 386949 15841664 ~ 15851809 (-) False AMCG00008964
TU66062 other downstream 386949 15841664 ~ 15851809 (-) True AMCG00008964
TU66056 other downstream 400957 15836989 ~ 15837801 (-) True G52782
TU66281 other upstream 150571 16404710 ~ 16405126 (-) True G52951
TU66358 other upstream 359085 16613224 ~ 16614461 (-) True G53017
TU66472 other upstream 598890 16853029 ~ 16913299 (-) False AMCG00008989
TU66702 other upstream 1482450 17736589 ~ 17747043 (-) False AMCG00009001
TU66751 other upstream 1614247 17868386 ~ 17868696 (-) True G53355

Expression Profile