RNA id: TU66257


Basic Information

Item Value
RNA id TU66257
length 1731
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G52929
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 16311392 ~ 16313985 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCTGTGCTGAAAGAAAGATTAGGAGTTGACCGTTCTAACCagaatttattaaatgtgtggGGAGAAATggcagaacacaaaacaaaaaaatattaagcaaGTATTAACTATTTTTCAAACATCCCAAGGAAGTAAAAAGCTTATATTCCCATTCCGGGATATACCCTCAAGGGGcttgacattttacaaagtgtctgattggtcatttctaataaataTAGCGGTGATTTCACTGGCATTCTAAACTCAGACTTCCCATCTCAtcactatttttattattacccttgagtaataatcattaacctttAAAATGACAGCTGCATTGGAAGGTCATTTGTCTTTAATATGTTGCAAGAAAAGAATGTATGTTGCTGATAACCAAGAAGGCAGGTGCTAAAAAGTTACTGAAAAGAGAACTCCAGGGTCACACGAAGGACAAAGGCAGAAtaggatttatatatttttcccccccacaccGCCTCCTGGGTGCCAGCTCACAACATCTATATCTAATATACAGTGATGCCATTTGGGGCGAGAGATGGGGAGTCCACCCTGGGAGGCTGAATCTTCAACACCAGACCGTGGGGGAAGTGAATTAACTGGGGGAGTACCTGACCACTGCTTCCACAGGACTAGCTCCCCTCCTTTATAAGGTAGGTAGTGCCTCACTCGGAGTCTGGCTGTGGAGAGCACAAGAGCGGTAGTGCACTGGGCTCGTGCACCAGGATTAGACTTGTGGCTGCAAGTCTCACTTGTCCTATTCCTACCCgtgtagagagggacctgtgtTTCGCATGCTGGGTAGACTCTTCTTACTGTGTCTCTGCTGGTCAACTCATAGTCATGCCTCGCCACATCCCTGCTGCCTGCTTCCACCACCCCACTGAATCCACCTCCAGTACACTGTGCATCTCCACAAGGTGACActaaatatctctctctctctccatatatatatatatatatatatatatatatacacatatatatatatatagagagagagagagagagaggggaggtaGATACAGTGCAGTGTTGCGAGTGAGATGGGATgctctgcagacagacagacacagcataGCTGAAAAGCCAGCTGAGTTAACTGTATAAAACAGGACACCACAGTGAAACAGACAGCCCTGCTACTGCTCTCTCACAAACAGGACAACAGAGTACAGCataatgcaatacagtacagtgctgtatagtataatgcagtgcagtacatCATACAGAAATAtgctacactacagtacagtatagaagAGTTCACACTatcatacagtacaatacactaCTAGGCAGGATAGTGTAGAAGAGTACAGTATAATGGATTATAGTACACTACACTtcaattcagtacagtacactatAATGTAGTAGAGAACAGTATGCTATAATATAGTATAACAGCACAGTAGAGTAAAATGCAGTACACAaaagtataatacagtgtagtacagcacACCAATGGAGTATAATGCAGTACAGTTTAATCCAAAGAGAGAGCAGAGTCAGAAAGAAATACTTCAGTGAAAACTAACATCAGGCACTTTATAATTTGTCAGAGGAGGAGTAGAAGATGCGAGAGAAAAGACAGAGCaggaggaaagagagaaaggagaaacaGAGGGAGGCCGAGAGAGCAATTATGGAGGATGGAGTTCTCAGTAttggatatacactcacctaaaggattattaggaacaccatactaatactgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66243 lncRNA downstream 57253 16238758 ~ 16254139 (-) True G52918
TU66240 lncRNA downstream 96377 16208865 ~ 16215015 (-) True G52915
TU66195 lncRNA downstream 181041 16129281 ~ 16130351 (-) True G52873
TU66188 lncRNA downstream 185125 16124963 ~ 16126267 (-) True G52866
TU66144 lncRNA downstream 361061 15944798 ~ 15950331 (-) True G52831
TU66268 lncRNA upstream 38027 16352012 ~ 16352300 (-) True G52938
TU66274 lncRNA upstream 48637 16362622 ~ 16362879 (-) True G52944
TU66334 lncRNA upstream 227283 16541268 ~ 16541555 (-) True G52999
TU66385 lncRNA upstream 359724 16673709 ~ 16729192 (-) True G53042
TU66457 lncRNA upstream 433866 16747851 ~ 16750617 (-) True G53096
AMCG00008977 mRNA downstream 13136 16293316 ~ 16298256 (-) True AMCG00008977
AMCG00008974 mRNA downstream 22020 16273804 ~ 16289372 (-) True AMCG00008974
AMCG00008973 mRNA downstream 78260 16216538 ~ 16233132 (-) True AMCG00008973
AMCG00008971 mRNA downstream 246552 16063554 ~ 16064840 (-) False AMCG00008971
AMCG00008968 mRNA downstream 413226 15895688 ~ 15898166 (-) True AMCG00008968
AMCG00008976 mRNA upstream 5383 16319368 ~ 16322631 (-) True AMCG00008976
AMCG00008975 mRNA upstream 22430 16336415 ~ 16338708 (-) True AMCG00008975
AMCG00008980 mRNA upstream 164803 16478788 ~ 16519566 (-) True AMCG00008980
AMCG00008987 mRNA upstream 468794 16782779 ~ 16784022 (-) True AMCG00008987
AMCG00008989 mRNA upstream 509810 16823795 ~ 16864424 (-) True AMCG00008989
TU66179 other downstream 237457 16064225 ~ 16073935 (-) True AMCG00008971
TU66151 other downstream 347775 15957667 ~ 15963617 (-) True G52834
TU66061 other downstream 459583 15841664 ~ 15851809 (-) False AMCG00008964
TU66062 other downstream 459583 15841664 ~ 15851809 (-) True AMCG00008964
TU66056 other downstream 473591 15836989 ~ 15837801 (-) True G52782
TU66281 other upstream 90725 16404710 ~ 16405126 (-) True G52951
TU66358 other upstream 299239 16613224 ~ 16614461 (-) True G53017
TU66472 other upstream 539044 16853029 ~ 16913299 (-) False AMCG00008989
TU66702 other upstream 1422604 17736589 ~ 17747043 (-) False AMCG00009001
TU66751 other upstream 1554401 17868386 ~ 17868696 (-) True G53355

Expression Profile