RNA id: TU66261



Basic Information


Item Value
RNA id TU66261
length 469
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id G52931
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 16343016 ~ 16344076 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AGGAACTTTGAGCCCaaacagaaaagacagacagacagcggcGGAGAGATAGACAGAAATATATCTACATAATAACGATAAACGCAGACAGTCGCGATGGCAACAGGCGATTCTCAGCGCTATCGGGACAAGGTCGTAATTGTCACGGGCGGGTCGAAGGGCATCGGCGCCGGTATCGTAAGAGTGTTCGTGGAAAATGGAGCTAAAGTAGTGTTCTGTGCCAGGGGGGGTGAGTGGAACCTTTGGACAACACTGCATAACAGGCACTGTTTAGTGACATATTTACCCAATTAACAcaatactgtactacactacagtactgCAGAGTACTattttgcactgtactgtactgcgcTACAATATAATAtgccgatcagccataacattatgaccactgacaggtgaagtgaataacactgataatctcgttatcatggctcctgtcagtgggtgggatatattaggcagc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU66218 lncRNA upstream 23164 16311392 ~ 16319852 (+) True G52896
TU66212 lncRNA upstream 98073 16243537 ~ 16244943 (+) True G52890
TU66199 lncRNA upstream 132972 16208948 ~ 16210044 (+) True G52877
TU66185 lncRNA upstream 244570 16098240 ~ 16098446 (+) True G52863
TU66180 lncRNA upstream 257173 16085528 ~ 16085843 (+) True G52861
TU66263 lncRNA downstream 180 16344256 ~ 16344678 (+) True G52933
TU66275 lncRNA downstream 25096 16369172 ~ 16369414 (+) True G52945
TU66276 lncRNA downstream 52204 16396280 ~ 16396481 (+) True G52946
TU66368 lncRNA downstream 310117 16654193 ~ 16654923 (+) True G53025
TU66382 lncRNA downstream 335749 16679825 ~ 16683932 (+) False AMCG00008985
AMCG00008972 mRNA upstream 208956 16126141 ~ 16134060 (+) True AMCG00008972
AMCG00008969 mRNA upstream 288491 16052549 ~ 16054525 (+) True AMCG00008969
AMCG00008970 mRNA upstream 350466 15992113 ~ 15992550 (+) True AMCG00008970
AMCG00008966 mRNA upstream 391991 15943157 ~ 15951025 (+) True AMCG00008966
AMCG00008967 mRNA upstream 411037 15931316 ~ 15931979 (+) True AMCG00008967
AMCG00008978 mRNA downstream 86741 16430817 ~ 16451251 (+) True AMCG00008978
AMCG00008981 mRNA downstream 203541 16547617 ~ 16558958 (+) True AMCG00008981
AMCG00008979 mRNA downstream 216946 16561022 ~ 16564235 (+) True AMCG00008979
AMCG00008983 mRNA downstream 235787 16579863 ~ 16587381 (+) True AMCG00008983
AMCG00008982 mRNA downstream 255584 16599660 ~ 16602244 (+) True AMCG00008982
TU66074 other upstream 479362 15856224 ~ 15863654 (+) True AMCG00008960
TU65619 other upstream 1533730 14807297 ~ 14809286 (+) False AMCG00008919
TU65601 other upstream 1548044 14792169 ~ 14794972 (+) False AMCG00008920
TU65600 other upstream 1548044 14792344 ~ 14794972 (+) False AMCG00008920
TU65523 other upstream 1802058 14527818 ~ 14540958 (+) False AMCG00008910
TU66272 other downstream 18026 16362102 ~ 16362511 (+) True G52942
TU66345 other downstream 235787 16579863 ~ 16583929 (+) False AMCG00008983
TU66371 other downstream 328427 16672503 ~ 16673542 (+) True G53028
TU66558 other downstream 986816 17330892 ~ 17339674 (+) True AMCG00008995
TU66686 other downstream 1385290 17729366 ~ 17730660 (+) True G53298

Expression Profile