RNA id: TU66272



Basic Information


Item Value
RNA id TU66272
length 250
RNA type TUCP
GC content 0.50
exon number 2
gene id G52942
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 16362102 ~ 16362511 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AGGAATACCTCCCCTGAGTCCTGGTGAAGCTGCCCAGAtgtctgatgaagatgaaggagtTAGCACTGTTGATGAAGATGCAGGTGCATCTAACACAAAATCAAGATGGTCGGAAGACAGGGACCCAAAagagAGTGGTGTCAGCGCTCCTCCTCTGAGCCCCAGGGATGCTCTCCCAATGTCTGATGAAGACGAAGGTGTCAACACTGGTGATGAGTCTGAAGATGATGACAAGGACCATGAATATGGC

Function


GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0017001 antibiotic catabolic process biological_process
GO:0006631 fatty acid metabolic process biological_process
GO:0042737 drug catabolic process biological_process
GO:0019541 propionate metabolic process biological_process
GO:0019543 propionate catabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0019626 short-chain fatty acid catabolic process biological_process
GO:0046459 short-chain fatty acid metabolic process biological_process

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU66263 lncRNA upstream 17424 16344256 ~ 16344678 (+) True G52933
TU66261 lncRNA upstream 18026 16343016 ~ 16344076 (+) True G52931
TU66218 lncRNA upstream 42250 16311392 ~ 16319852 (+) True G52896
TU66212 lncRNA upstream 117159 16243537 ~ 16244943 (+) True G52890
TU66199 lncRNA upstream 152058 16208948 ~ 16210044 (+) True G52877
TU66275 lncRNA downstream 6661 16369172 ~ 16369414 (+) True G52945
TU66276 lncRNA downstream 33769 16396280 ~ 16396481 (+) True G52946
TU66368 lncRNA downstream 291682 16654193 ~ 16654923 (+) True G53025
TU66382 lncRNA downstream 317314 16679825 ~ 16683932 (+) False AMCG00008985
TU66396 lncRNA downstream 368878 16731389 ~ 16737398 (+) True AMCG00008988
AMCG00008972 mRNA upstream 228042 16126141 ~ 16134060 (+) True AMCG00008972
AMCG00008969 mRNA upstream 307577 16052549 ~ 16054525 (+) True AMCG00008969
AMCG00008970 mRNA upstream 369552 15992113 ~ 15992550 (+) True AMCG00008970
AMCG00008966 mRNA upstream 411077 15943157 ~ 15951025 (+) True AMCG00008966
AMCG00008967 mRNA upstream 430123 15931316 ~ 15931979 (+) True AMCG00008967
AMCG00008978 mRNA downstream 68306 16430817 ~ 16451251 (+) True AMCG00008978
AMCG00008981 mRNA downstream 185106 16547617 ~ 16558958 (+) True AMCG00008981
AMCG00008979 mRNA downstream 198511 16561022 ~ 16564235 (+) True AMCG00008979
AMCG00008983 mRNA downstream 217352 16579863 ~ 16587381 (+) True AMCG00008983
AMCG00008982 mRNA downstream 237149 16599660 ~ 16602244 (+) True AMCG00008982
TU66074 other upstream 498448 15856224 ~ 15863654 (+) True AMCG00008960
TU65619 other upstream 1552816 14807297 ~ 14809286 (+) False AMCG00008919
TU65601 other upstream 1567130 14792169 ~ 14794972 (+) False AMCG00008920
TU65600 other upstream 1567130 14792344 ~ 14794972 (+) False AMCG00008920
TU65523 other upstream 1821144 14527818 ~ 14540958 (+) False AMCG00008910
TU66345 other downstream 217352 16579863 ~ 16583929 (+) False AMCG00008983
TU66371 other downstream 309992 16672503 ~ 16673542 (+) True G53028
TU66558 other downstream 968381 17330892 ~ 17339674 (+) True AMCG00008995
TU66686 other downstream 1366855 17729366 ~ 17730660 (+) True G53298
TU66780 other downstream 1555155 17917666 ~ 17920053 (+) False AMCG00009009

Expression Profile